/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
*/
package jalview.jbgui;
+import jalview.util.ImageMaker.TYPE;
import jalview.util.MessageManager;
-import java.awt.*;
-import java.awt.event.*;
-
-import javax.swing.*;
-import javax.swing.event.*;
+import java.awt.BorderLayout;
+import java.awt.Color;
+import java.awt.FlowLayout;
+import java.awt.Font;
+import java.awt.GridLayout;
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+
+import javax.swing.JButton;
+import javax.swing.JCheckBoxMenuItem;
+import javax.swing.JComboBox;
+import javax.swing.JInternalFrame;
+import javax.swing.JLabel;
+import javax.swing.JMenu;
+import javax.swing.JMenuBar;
+import javax.swing.JMenuItem;
+import javax.swing.JPanel;
+import javax.swing.event.MenuEvent;
+import javax.swing.event.MenuListener;
public class GPCAPanel extends JInternalFrame
{
- JPanel jPanel2 = new JPanel();
-
- JLabel jLabel1 = new JLabel();
-
- JLabel jLabel2 = new JLabel();
-
- JLabel jLabel3 = new JLabel();
-
- protected JComboBox xCombobox = new JComboBox();
-
- protected JComboBox yCombobox = new JComboBox();
-
- protected JComboBox zCombobox = new JComboBox();
-
- protected JButton resetButton = new JButton();
+ private static final Font VERDANA_12 = new Font("Verdana", 0, 12);
- FlowLayout flowLayout1 = new FlowLayout();
+ protected JComboBox<String> xCombobox = new JComboBox<String>();
- BorderLayout borderLayout1 = new BorderLayout();
+ protected JComboBox<String> yCombobox = new JComboBox<String>();
- JMenuBar jMenuBar1 = new JMenuBar();
+ protected JComboBox<String> zCombobox = new JComboBox<String>();
- JMenu fileMenu = new JMenu();
-
- JMenu saveMenu = new JMenu();
-
- protected JMenu scoreMatrixMenu = new JMenu();
-
- JMenuItem eps = new JMenuItem();
-
- JMenuItem png = new JMenuItem();
-
- JMenuItem print = new JMenuItem();
-
- JMenuItem outputValues = new JMenuItem();
-
- JMenuItem outputPoints = new JMenuItem();
-
- JMenuItem outputProjPoints = new JMenuItem();
+ protected JMenu scoreModelMenu = new JMenu();
protected JMenu viewMenu = new JMenu();
protected JCheckBoxMenuItem showLabels = new JCheckBoxMenuItem();
- JMenuItem bgcolour = new JMenuItem();
-
- JMenuItem originalSeqData = new JMenuItem();
-
protected JMenu associateViewsMenu = new JMenu();
protected JMenu calcSettings = new JMenu();
protected JCheckBoxMenuItem protSetting = new JCheckBoxMenuItem();
- protected JCheckBoxMenuItem jvVersionSetting = new JCheckBoxMenuItem();
-
protected JLabel statusBar = new JLabel();
- protected GridLayout statusPanelLayout = new GridLayout();
-
protected JPanel statusPanel = new JPanel();
public GPCAPanel()
yCombobox.addItem("dim " + i);
zCombobox.addItem("dim " + i);
}
-
- setJMenuBar(jMenuBar1);
}
private void jbInit() throws Exception
{
- this.getContentPane().setLayout(borderLayout1);
- jPanel2.setLayout(flowLayout1);
- jLabel1.setFont(new java.awt.Font("Verdana", 0, 12));
+ this.getContentPane().setLayout(new BorderLayout());
+ JPanel jPanel2 = new JPanel();
+ jPanel2.setLayout(new FlowLayout());
+ JLabel jLabel1 = new JLabel();
+ jLabel1.setFont(VERDANA_12);
jLabel1.setText("x=");
- jLabel2.setFont(new java.awt.Font("Verdana", 0, 12));
+ JLabel jLabel2 = new JLabel();
+ jLabel2.setFont(VERDANA_12);
jLabel2.setText("y=");
- jLabel3.setFont(new java.awt.Font("Verdana", 0, 12));
+ JLabel jLabel3 = new JLabel();
+ jLabel3.setFont(VERDANA_12);
jLabel3.setText("z=");
jPanel2.setBackground(Color.white);
jPanel2.setBorder(null);
- zCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
- zCombobox.addActionListener(new java.awt.event.ActionListener()
+ zCombobox.setFont(VERDANA_12);
+ zCombobox.addActionListener(new ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent e)
{
zCombobox_actionPerformed(e);
}
});
- yCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
- yCombobox.addActionListener(new java.awt.event.ActionListener()
+ yCombobox.setFont(VERDANA_12);
+ yCombobox.addActionListener(new ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent e)
{
yCombobox_actionPerformed(e);
}
});
- xCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
- xCombobox.addActionListener(new java.awt.event.ActionListener()
+ xCombobox.setFont(VERDANA_12);
+ xCombobox.addActionListener(new ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent e)
{
xCombobox_actionPerformed(e);
}
});
- resetButton.setFont(new java.awt.Font("Verdana", 0, 12));
+ JButton resetButton = new JButton();
+ resetButton.setFont(VERDANA_12);
resetButton.setText(MessageManager.getString("action.reset"));
- resetButton.addActionListener(new java.awt.event.ActionListener()
+ resetButton.addActionListener(new ActionListener()
{
@Override
public void actionPerformed(ActionEvent e)
resetButton_actionPerformed(e);
}
});
+ JMenu fileMenu = new JMenu();
fileMenu.setText(MessageManager.getString("action.file"));
+ JMenu saveMenu = new JMenu();
saveMenu.setText(MessageManager.getString("action.save_as"));
- eps.setText("EPS");
+ JMenuItem eps = new JMenuItem("EPS");
eps.addActionListener(new ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent e)
{
- eps_actionPerformed(e);
+ makePCAImage(TYPE.EPS);
}
});
- png.setText("PNG");
+ JMenuItem png = new JMenuItem("PNG");
png.addActionListener(new ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent e)
{
- png_actionPerformed(e);
+ makePCAImage(TYPE.PNG);
}
});
+ JMenuItem outputValues = new JMenuItem();
outputValues.setText(MessageManager.getString("label.output_values"));
outputValues.addActionListener(new ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent e)
{
outputValues_actionPerformed(e);
}
});
+ JMenuItem outputPoints = new JMenuItem();
outputPoints.setText(MessageManager.getString("label.output_points"));
outputPoints.addActionListener(new ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent e)
{
outputPoints_actionPerformed(e);
}
});
- outputProjPoints.setText(MessageManager.getString("label.output_transformed_points") + "...");
+ JMenuItem outputProjPoints = new JMenuItem();
+ outputProjPoints.setText(
+ MessageManager.getString("label.output_transformed_points"));
outputProjPoints.addActionListener(new ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent e)
{
outputProjPoints_actionPerformed(e);
}
});
+ JMenuItem print = new JMenuItem();
+ print.setText(MessageManager.getString("action.print"));
print.addActionListener(new ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent e)
{
print_actionPerformed(e);
viewMenu.setText(MessageManager.getString("action.view"));
viewMenu.addMenuListener(new MenuListener()
{
+ @Override
public void menuSelected(MenuEvent e)
{
viewMenu_menuSelected();
}
+ @Override
public void menuDeselected(MenuEvent e)
{
}
+ @Override
public void menuCanceled(MenuEvent e)
{
}
});
- scoreMatrixMenu.setText(MessageManager.getString("label.select_score_model"));
- scoreMatrixMenu.addMenuListener(new MenuListener()
+ scoreModelMenu
+ .setText(MessageManager.getString("label.select_score_model"));
+ scoreModelMenu.addMenuListener(new MenuListener()
{
+ @Override
public void menuSelected(MenuEvent e)
{
- scoreMatrix_menuSelected();
+ scoreModel_menuSelected();
}
+ @Override
public void menuDeselected(MenuEvent e)
{
}
+ @Override
public void menuCanceled(MenuEvent e)
{
}
showLabels.setText(MessageManager.getString("label.show_labels"));
showLabels.addActionListener(new ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent e)
{
showLabels_actionPerformed(e);
}
});
- print.setText(MessageManager.getString("action.print"));
- bgcolour.setText(MessageManager.getString("label.background_colour") + "...");
+ JMenuItem bgcolour = new JMenuItem();
+ bgcolour.setText(MessageManager.getString("action.background_colour"));
bgcolour.addActionListener(new ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent e)
{
bgcolour_actionPerformed(e);
}
});
+ JMenuItem originalSeqData = new JMenuItem();
originalSeqData.setText(MessageManager.getString("label.input_data"));
originalSeqData.addActionListener(new ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent e)
{
originalSeqData_actionPerformed(e);
}
});
- associateViewsMenu.setText(MessageManager.getString("label.associate_nodes_with"));
+ associateViewsMenu.setText(
+ MessageManager.getString("label.associate_nodes_with"));
calcSettings.setText(MessageManager.getString("action.change_params"));
- nuclSetting.setText(MessageManager.getString("label.nucleotide_matrix"));
+ nuclSetting
+ .setText(MessageManager.getString("label.nucleotide_matrix"));
protSetting.setText(MessageManager.getString("label.protein_matrix"));
nuclSetting.addActionListener(new ActionListener()
{
protSetting_actionPerfomed(arg0);
}
});
- jvVersionSetting.setText(MessageManager.getString("label.jalview_pca_calculation"));
- jvVersionSetting.addActionListener(new ActionListener()
- {
- @Override
- public void actionPerformed(ActionEvent arg0)
- {
- jvVersionSetting_actionPerfomed(arg0);
- }
- });
- calcSettings.add(jvVersionSetting);
+
calcSettings.add(nuclSetting);
calcSettings.add(protSetting);
- calcSettings.add(scoreMatrixMenu);
- statusPanel.setLayout(statusPanelLayout);
- statusBar.setFont(new java.awt.Font("Verdana", 0, 12));
+ calcSettings.add(scoreModelMenu);
+ statusPanel.setLayout(new GridLayout());
+ statusBar.setFont(VERDANA_12);
// statusPanel.setBackground(Color.lightGray);
// statusBar.setBackground(Color.lightGray);
// statusPanel.add(statusBar, null);
jPanel2.add(jLabel3, null);
jPanel2.add(zCombobox, null);
jPanel2.add(resetButton, null);
+
+ JMenuBar jMenuBar1 = new JMenuBar();
jMenuBar1.add(fileMenu);
jMenuBar1.add(viewMenu);
jMenuBar1.add(calcSettings);
+ setJMenuBar(jMenuBar1);
fileMenu.add(saveMenu);
fileMenu.add(outputValues);
fileMenu.add(print);
viewMenu.add(associateViewsMenu);
}
- protected void scoreMatrix_menuSelected()
+ protected void scoreModel_menuSelected()
{
// TODO Auto-generated method stub
-
+
}
protected void resetButton_actionPerformed(ActionEvent e)
{
}
- public void eps_actionPerformed(ActionEvent e)
+ public void makePCAImage(TYPE imageType)
{
-
- }
-
- public void png_actionPerformed(ActionEvent e)
- {
-
}
public void outputValues_actionPerformed(ActionEvent e)
{
}
-
- protected void jvVersionSetting_actionPerfomed(ActionEvent arg0)
- {
- // TODO Auto-generated method stub
-
- }
}