/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
- * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
*
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * This file is part of Jalview.
*
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
*/
package jalview.jbgui;
import java.awt.*;
import java.awt.event.*;
+
import javax.swing.*;
import javax.swing.event.*;
protected JComboBox zCombobox = new JComboBox();
+ protected JButton resetButton = new JButton();
+
FlowLayout flowLayout1 = new FlowLayout();
BorderLayout borderLayout1 = new BorderLayout();
JMenuItem outputValues = new JMenuItem();
+ JMenuItem outputPoints = new JMenuItem();
+
+ JMenuItem outputProjPoints = new JMenuItem();
+
protected JMenu viewMenu = new JMenu();
protected JCheckBoxMenuItem showLabels = new JCheckBoxMenuItem();
protected JMenu associateViewsMenu = new JMenu();
+ protected JMenu calcSettings = new JMenu();
+
+ protected JCheckBoxMenuItem nuclSetting = new JCheckBoxMenuItem();
+
+ protected JCheckBoxMenuItem protSetting = new JCheckBoxMenuItem();
+
+ protected JCheckBoxMenuItem jvVersionSetting = new JCheckBoxMenuItem();
+
+ protected JLabel statusBar = new JLabel();
+
+ protected GridLayout statusPanelLayout = new GridLayout();
+
+ protected JPanel statusPanel = new JPanel();
+
public GPCAPanel()
{
try
xCombobox_actionPerformed(e);
}
});
+ resetButton.setFont(new java.awt.Font("Verdana", 0, 12));
+ resetButton.setText("Reset");
+ resetButton.addActionListener(new java.awt.event.ActionListener()
+ {
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ resetButton_actionPerformed(e);
+ }
+ });
fileMenu.setText("File");
saveMenu.setText("Save as");
eps.setText("EPS");
outputValues_actionPerformed(e);
}
});
+ outputPoints.setText("Output points...");
+ outputPoints.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ outputPoints_actionPerformed(e);
+ }
+ });
+ outputProjPoints.setText("Output transformed points...");
+ outputProjPoints.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ outputProjPoints_actionPerformed(e);
+ }
+ });
print.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
}
});
associateViewsMenu.setText("Associate Nodes With");
- this.getContentPane().add(jPanel2, BorderLayout.SOUTH);
+ calcSettings.setText("Change Parameters");
+ nuclSetting.setText("Nucleotide matrix");
+ protSetting.setText("Protein matrix");
+ nuclSetting.addActionListener(new ActionListener()
+ {
+
+ @Override
+ public void actionPerformed(ActionEvent arg0)
+ {
+ nuclSetting_actionPerfomed(arg0);
+ }
+ });
+ protSetting.addActionListener(new ActionListener()
+ {
+
+ @Override
+ public void actionPerformed(ActionEvent arg0)
+ {
+ protSetting_actionPerfomed(arg0);
+ }
+ });
+ jvVersionSetting.setText("Jalview PCA Calculation");
+ jvVersionSetting.addActionListener(new ActionListener()
+ {
+ @Override
+ public void actionPerformed(ActionEvent arg0)
+ {
+ jvVersionSetting_actionPerfomed(arg0);
+ }
+ });
+ calcSettings.add(jvVersionSetting);
+ calcSettings.add(nuclSetting);
+ calcSettings.add(protSetting);
+ statusPanel.setLayout(statusPanelLayout);
+ statusBar.setFont(new java.awt.Font("Verdana", 0, 12));
+ // statusPanel.setBackground(Color.lightGray);
+ // statusBar.setBackground(Color.lightGray);
+ // statusPanel.add(statusBar, null);
+ JPanel panelBar = new JPanel(new BorderLayout());
+ panelBar.add(jPanel2, BorderLayout.NORTH);
+ panelBar.add(statusPanel, BorderLayout.SOUTH);
+ this.getContentPane().add(panelBar, BorderLayout.SOUTH);
jPanel2.add(jLabel1, null);
jPanel2.add(xCombobox, null);
jPanel2.add(jLabel2, null);
jPanel2.add(yCombobox, null);
jPanel2.add(jLabel3, null);
jPanel2.add(zCombobox, null);
+ jPanel2.add(resetButton, null);
jMenuBar1.add(fileMenu);
jMenuBar1.add(viewMenu);
+ jMenuBar1.add(calcSettings);
fileMenu.add(saveMenu);
fileMenu.add(outputValues);
fileMenu.add(print);
fileMenu.add(originalSeqData);
+ fileMenu.add(outputPoints);
+ fileMenu.add(outputProjPoints);
saveMenu.add(eps);
saveMenu.add(png);
viewMenu.add(showLabels);
viewMenu.add(associateViewsMenu);
}
+ protected void resetButton_actionPerformed(ActionEvent e)
+ {
+ // TODO Auto-generated method stub
+
+ }
+
+ protected void protSetting_actionPerfomed(ActionEvent arg0)
+ {
+ // TODO Auto-generated method stub
+
+ }
+
+ protected void nuclSetting_actionPerfomed(ActionEvent arg0)
+ {
+ // TODO Auto-generated method stub
+
+ }
+
+ protected void outputPoints_actionPerformed(ActionEvent e)
+ {
+ // TODO Auto-generated method stub
+
+ }
+
+ protected void outputProjPoints_actionPerformed(ActionEvent e)
+ {
+ // TODO Auto-generated method stub
+
+ }
+
protected void xCombobox_actionPerformed(ActionEvent e)
{
}
{
}
+
+ protected void jvVersionSetting_actionPerfomed(ActionEvent arg0)
+ {
+ // TODO Auto-generated method stub
+
+ }
}