*/
package jalview.jbgui;
-import jalview.util.MessageManager;
-
import java.awt.BorderLayout;
import java.awt.Color;
import java.awt.FlowLayout;
import javax.swing.event.MenuEvent;
import javax.swing.event.MenuListener;
+import jalview.util.ImageMaker.TYPE;
+import jalview.util.MessageManager;
+
public class GPCAPanel extends JInternalFrame
{
private static final Font VERDANA_12 = new Font("Verdana", 0, 12);
- protected JComboBox<String> xCombobox = new JComboBox<String>();
-
- protected JComboBox<String> yCombobox = new JComboBox<String>();
+ protected JComboBox<String> xCombobox = new JComboBox<>();
- protected JComboBox<String> zCombobox = new JComboBox<String>();
+ protected JComboBox<String> yCombobox = new JComboBox<>();
- protected JMenu scoreModelMenu = new JMenu();
+ protected JComboBox<String> zCombobox = new JComboBox<>();
protected JMenu viewMenu = new JMenu();
protected JMenu associateViewsMenu = new JMenu();
- protected JMenu calcSettings = new JMenu();
-
- protected JCheckBoxMenuItem nuclSetting = new JCheckBoxMenuItem();
-
- protected JCheckBoxMenuItem protSetting = new JCheckBoxMenuItem();
-
protected JLabel statusBar = new JLabel();
protected JPanel statusPanel = new JPanel();
+ protected JMenuItem originalSeqData;
+
+ /**
+ * Constructor
+ */
public GPCAPanel()
{
try
private void jbInit() throws Exception
{
+ setFrameIcon(null);
+ setName("jalview-pca");
this.getContentPane().setLayout(new BorderLayout());
JPanel jPanel2 = new JPanel();
jPanel2.setLayout(new FlowLayout());
@Override
public void actionPerformed(ActionEvent e)
{
- zCombobox_actionPerformed(e);
+ doDimensionChange();
}
});
yCombobox.setFont(VERDANA_12);
@Override
public void actionPerformed(ActionEvent e)
{
- yCombobox_actionPerformed(e);
+ doDimensionChange();
}
});
xCombobox.setFont(VERDANA_12);
@Override
public void actionPerformed(ActionEvent e)
{
- xCombobox_actionPerformed(e);
+ doDimensionChange();
}
});
JButton resetButton = new JButton();
@Override
public void actionPerformed(ActionEvent e)
{
- resetButton_actionPerformed(e);
+ resetButton_actionPerformed();
}
});
JMenu fileMenu = new JMenu();
@Override
public void actionPerformed(ActionEvent e)
{
- eps_actionPerformed(e);
+ makePCAImage(TYPE.EPS);
}
});
JMenuItem png = new JMenuItem("PNG");
@Override
public void actionPerformed(ActionEvent e)
{
- png_actionPerformed(e);
+ makePCAImage(TYPE.PNG);
}
});
JMenuItem outputValues = new JMenuItem();
@Override
public void actionPerformed(ActionEvent e)
{
- outputValues_actionPerformed(e);
+ outputValues_actionPerformed();
}
});
JMenuItem outputPoints = new JMenuItem();
@Override
public void actionPerformed(ActionEvent e)
{
- outputPoints_actionPerformed(e);
+ outputPoints_actionPerformed();
}
});
JMenuItem outputProjPoints = new JMenuItem();
- outputProjPoints.setText(MessageManager
- .getString("label.output_transformed_points"));
+ outputProjPoints.setText(
+ MessageManager.getString("label.output_transformed_points"));
outputProjPoints.addActionListener(new ActionListener()
{
@Override
public void actionPerformed(ActionEvent e)
{
- outputProjPoints_actionPerformed(e);
+ outputProjPoints_actionPerformed();
}
});
JMenuItem print = new JMenuItem();
@Override
public void actionPerformed(ActionEvent e)
{
- print_actionPerformed(e);
+ print_actionPerformed();
}
});
viewMenu.setText(MessageManager.getString("action.view"));
{
}
});
- scoreModelMenu.setText(MessageManager
- .getString("label.select_score_model"));
- scoreModelMenu.addMenuListener(new MenuListener()
- {
- @Override
- public void menuSelected(MenuEvent e)
- {
- scoreModel_menuSelected();
- }
-
- @Override
- public void menuDeselected(MenuEvent e)
- {
- }
-
- @Override
- public void menuCanceled(MenuEvent e)
- {
- }
- });
showLabels.setText(MessageManager.getString("label.show_labels"));
showLabels.addActionListener(new ActionListener()
{
@Override
public void actionPerformed(ActionEvent e)
{
- showLabels_actionPerformed(e);
+ showLabels_actionPerformed();
}
});
JMenuItem bgcolour = new JMenuItem();
@Override
public void actionPerformed(ActionEvent e)
{
- bgcolour_actionPerformed(e);
+ bgcolour_actionPerformed();
}
});
- JMenuItem originalSeqData = new JMenuItem();
+ originalSeqData = new JMenuItem();
originalSeqData.setText(MessageManager.getString("label.input_data"));
originalSeqData.addActionListener(new ActionListener()
{
@Override
public void actionPerformed(ActionEvent e)
{
- originalSeqData_actionPerformed(e);
+ originalSeqData_actionPerformed();
}
});
- associateViewsMenu.setText(MessageManager
- .getString("label.associate_nodes_with"));
- calcSettings.setText(MessageManager.getString("action.change_params"));
- nuclSetting
- .setText(MessageManager.getString("label.nucleotide_matrix"));
- protSetting.setText(MessageManager.getString("label.protein_matrix"));
- nuclSetting.addActionListener(new ActionListener()
- {
+ associateViewsMenu.setText(
+ MessageManager.getString("label.associate_nodes_with"));
- @Override
- public void actionPerformed(ActionEvent arg0)
- {
- nuclSetting_actionPerfomed(arg0);
- }
- });
- protSetting.addActionListener(new ActionListener()
- {
-
- @Override
- public void actionPerformed(ActionEvent arg0)
- {
- protSetting_actionPerfomed(arg0);
- }
- });
-
- calcSettings.add(nuclSetting);
- calcSettings.add(protSetting);
- calcSettings.add(scoreModelMenu);
statusPanel.setLayout(new GridLayout());
statusBar.setFont(VERDANA_12);
// statusPanel.setBackground(Color.lightGray);
JMenuBar jMenuBar1 = new JMenuBar();
jMenuBar1.add(fileMenu);
jMenuBar1.add(viewMenu);
- jMenuBar1.add(calcSettings);
setJMenuBar(jMenuBar1);
fileMenu.add(saveMenu);
fileMenu.add(outputValues);
viewMenu.add(associateViewsMenu);
}
- protected void scoreModel_menuSelected()
- {
- // TODO Auto-generated method stub
-
- }
-
- protected void resetButton_actionPerformed(ActionEvent e)
- {
- // TODO Auto-generated method stub
-
- }
-
- protected void protSetting_actionPerfomed(ActionEvent arg0)
- {
- // TODO Auto-generated method stub
-
- }
-
- protected void nuclSetting_actionPerfomed(ActionEvent arg0)
- {
- // TODO Auto-generated method stub
-
- }
-
- protected void outputPoints_actionPerformed(ActionEvent e)
+ protected void resetButton_actionPerformed()
{
- // TODO Auto-generated method stub
-
}
- protected void outputProjPoints_actionPerformed(ActionEvent e)
+ protected void outputPoints_actionPerformed()
{
- // TODO Auto-generated method stub
-
}
- protected void xCombobox_actionPerformed(ActionEvent e)
+ protected void outputProjPoints_actionPerformed()
{
}
- protected void yCombobox_actionPerformed(ActionEvent e)
+ public void makePCAImage(TYPE imageType)
{
}
- protected void zCombobox_actionPerformed(ActionEvent e)
+ protected void outputValues_actionPerformed()
{
}
- public void eps_actionPerformed(ActionEvent e)
+ protected void print_actionPerformed()
{
-
}
- public void png_actionPerformed(ActionEvent e)
+ protected void showLabels_actionPerformed()
{
-
}
- public void outputValues_actionPerformed(ActionEvent e)
+ protected void bgcolour_actionPerformed()
{
-
}
- public void print_actionPerformed(ActionEvent e)
+ protected void originalSeqData_actionPerformed()
{
-
}
- public void showLabels_actionPerformed(ActionEvent e)
+ protected void viewMenu_menuSelected()
{
-
}
- public void bgcolour_actionPerformed(ActionEvent e)
+ protected void doDimensionChange()
{
-
- }
-
- public void originalSeqData_actionPerformed(ActionEvent e)
- {
-
- }
-
- public void viewMenu_menuSelected()
- {
-
}
}