boolean useLegacy = false;
+ public static final Color OVERVIEW_DEFAULT_GAP = Color.lightGray;
+
+ public static final Color OVERVIEW_DEFAULT_LEGACY_GAP = Color.white;
+
+ public static final Color OVERVIEW_DEFAULT_HIDDEN = Color.darkGray
+ .darker();
+
/**
* Constructor without colour settings (used by applet)
*/
public OverviewResColourFinder()
{
- GAP_COLOUR = Color.lightGray;
- RESIDUE_COLOUR = Color.white;
- HIDDEN_COLOUR = Color.DARK_GRAY.darker();
+ this(false, OVERVIEW_DEFAULT_GAP, OVERVIEW_DEFAULT_HIDDEN);
}
/**
// settings
if (shader.getColourScheme() != null)
{
- if (!shader.getColourScheme().hasGapColour()
- && Comparison.isGap(currentChar))
+ if (Comparison.isGap(currentChar)
+ && (!shader.getColourScheme().hasGapColour()))
{
resBoxColour = GAP_COLOUR;
}
*/
@Override
protected Color getResidueBoxColour(boolean showBoxes,
- ResidueShaderI shader,
- SequenceGroup[] allGroups, SequenceI seq, int i)
+ ResidueShaderI shader, SequenceGroup[] allGroups, SequenceI seq,
+ int i)
{
ResidueShaderI currentShader;
SequenceGroup currentSequenceGroup = getCurrentSequenceGroup(allGroups,