/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
*
*/
package jalview.schemes;
-import java.awt.*;
+import java.awt.Color;
+
+import jalview.datamodel.AnnotatedCollectionI;
+import jalview.datamodel.SequenceI;
public interface ColourSchemeI
{
public Color findColour(char c);
- public Color findColour(char c, int j);
+ public Color findColour(char c, int j, SequenceI seq);
public void setConsensus(java.util.Hashtable[] h);
public void setThreshold(int ct, boolean ignoreGaps);
+ public void alignmentChanged(AnnotatedCollectionI alignment);
+
}