public static final int RNAHELIX = 16;
+ public static final int RNAINTERACTION = 16;
+
/**
* index of first colourscheme (includes 'None')
*/
public static final int FIRST_COLOUR = NONE;
- public static final int LAST_COLOUR = NUCLEOTIDE;
+ public static final int LAST_COLOUR = RNAHELIX;
/**
* DOCUMENT ME!
{
ret = PURINEPYRIMIDINE;
}
+ else if (name.equalsIgnoreCase("RNA Interaction type"))
+ {
+ ret = RNAINTERACTION;
+ }
else if (name.equalsIgnoreCase("RNA Helices"))
{
ret = RNAHELIX;
{
index = TCOFFEE;
}
+<<<<<<< HEAD
+
+
+
+=======
else if (cs instanceof RNAHelicesColour)
{
index = RNAHELIX;
}
+>>>>>>> JAL-952_rnahelix
/*
* else if (cs instanceof CovariationColourScheme) { index = COVARIATION; }
*/
ret = "T-Coffee Scores";
break;
+<<<<<<< HEAD
+
+ case RNAINTERACTION:
+ ret = "RNA Interaction type";
+
+ break;
+=======
case RNAHELIX:
ret = "RNA Helices";
break;
+>>>>>>> JAL-952_rnahelix
/*
* case COVARIATION: ret = "Covariation";
*
// case COVARIATION:
// cs = new CovariationColourScheme(annotation);
-
- // break;
+ // break;
case USER_DEFINED:
Color[] col = new Color[24];