oldcs = av.getGlobalColourScheme();
if (av.getAlignment().getGroups() != null)
{
- oldgroupColours = new Hashtable<SequenceGroup, ColourSchemeI>();
+ oldgroupColours = new Hashtable<>();
for (SequenceGroup sg : ap.getAlignment().getGroups())
{
if (sg.getColourScheme() != null)
this.ap = ap;
adjusting = true;
- Vector<String> list = new Vector<String>();
+ Vector<String> list = new Vector<>();
int index = 1;
AlignmentAnnotation[] anns = av.getAlignment().getAlignmentAnnotation();
if (anns != null)
av.setGlobalColourScheme(rhc);
- ap.paintAlignment(true);
+ ap.paintAlignment(true, true);
}
}