import jalview.datamodel.SequenceI;
import java.util.Hashtable;
-import java.util.Vector;
public class GroupUrlLink
{
{
if (tokens == null)
{
- tokens = new String[]
- { "SEQUENCEIDS", "SEQUENCES", "DATASETID" };
+ tokens = new String[] { "SEQUENCEIDS", "SEQUENCES", "DATASETID" };
}
}
Hashtable rstrings = new Hashtable();
rstrings.put(tokens[0], idstrings);
rstrings.put(tokens[1], seqstrings);
- rstrings.put(tokens[2], new String[]
- { dsstring });
+ rstrings.put(tokens[2], new String[] { dsstring });
if (idstrings.length != seqstrings.length)
{
- throw new Error(MessageManager.getString("error.idstring_seqstrings_only_one_per_sequence"));
+ throw new Error(
+ MessageManager
+ .getString("error.idstring_seqstrings_only_one_per_sequence"));
}
return rstrings;
}
Object[] stubs = makeUrlsIf(false, rstrings, b);
if (stubs != null)
{
- return new Object[]
- { stubs[0], stubs[1], rstrings, new boolean[]
- { b } };
+ return new Object[] { stubs[0], stubs[1], rstrings,
+ new boolean[] { b } };
}
// TODO Auto-generated method stub
return null;
{
if (maxs != idseq[i].length)
{
- throw new Error(MessageManager.formatMessage("error.cannot_have_mixed_length_replacement_vectors",
- new String[]{(mtch[i]), Integer.valueOf(idseq[i].length).toString(),Integer.valueOf(maxs).toString()}));
+ throw new Error(MessageManager.formatMessage(
+ "error.cannot_have_mixed_length_replacement_vectors",
+ new String[] { (mtch[i]),
+ Integer.valueOf(idseq[i].length).toString(),
+ Integer.valueOf(maxs).toString() }));
}
}
}
else
{
- throw new Error(MessageManager.getString("error.cannot_have_zero_length_vector_replacement_strings"));
+ throw new Error(
+ MessageManager
+ .getString("error.cannot_have_zero_length_vector_replacement_strings"));
}
}
// iterate through input, collating segments to be inserted into url
{
// just return the essential info about what the URL would be generated
// from
- return new Object[]
- { new int[]
- { seqsmatched }, thismatched };
+ return new Object[] { new int[] { seqsmatched }, thismatched };
}
// otherwise, create the URL completely.
}
}
- return new Object[]
- { new int[]
- { seqsmatched }, thismatched, matched, new String[]
- { submiturl.toString() } };
+ return new Object[] { new int[] { seqsmatched }, thismatched, matched,
+ new String[] { submiturl.toString() } };
}
/**
public static void main(String argv[])
{
// note - JAL-1383 - these services are all dead
- String[] links = new String[]
- {
+ String[] links = new String[] {
"EnVision2|IDS|http://www.ebi.ac.uk/enfin-srv/envision2/pages/linkin.jsf?workflow=Enfin%20Default%20Workflow&datasetName=linkInDatasetFromJalview&input=$SEQUENCEIDS$&inputType=0|,",
"EnVision2|Seqs|http://www.ebi.ac.uk/enfin-srv/envision2/pages/linkin.jsf?workflow=Enfin%20Default%20Workflow&datasetName=linkInDatasetFromJalview&input=$SEQUENCES$&inputType=1|,",
"EnVision2|IDS|http://www.ebi.ac.uk/enfin-srv/envision2/pages/linkin.jsf?workflow=Enfin%20Default%20Workflow&datasetName=$DATASETID$&input=$SEQUENCEIDS$&inputType=0|,",
*/
};
- SequenceI[] seqs = new SequenceI[]
- { new Sequence("StupidLabel:gi|9234|pdb|102L|A",
+ SequenceI[] seqs = new SequenceI[] { new Sequence(
+ "StupidLabel:gi|9234|pdb|102L|A",
"asdiasdpasdpadpwpadasdpaspdw"), };
String[][] seqsandids = formStrings(seqs);
for (int i = 0; i < links.length; i++)