ColumnCell cell = null;
if (col != null)
{
+ SequenceI dseq = seq;
+ while (dseq.getDatasetSequence() != null)
+ {
+ dseq = dseq.getDatasetSequence();
+ }
if (col == STRUCTURES_NUM)
{
- while (seq.getDatasetSequence() != null)
- {
- seq = seq.getDatasetSequence();
- }
- Vector pdbE = seq.getAllPDBEntries();
+ Vector pdbE = dseq.getAllPDBEntries();
if (pdbE == null)
{
return null;
}
if (col.featureTypeName != null)
{
- List<SequenceFeature> np = seq.getFeatures()
+ List<SequenceFeature> np = dseq.getFeatures()
.getNonPositionalFeatures(col.featureTypeName);
if (np != null)
{
for (SequenceFeature npfeat : np)
{
// nb deal with multiplicities!
- if (col.featureGroupName != null && npfeat.featureGroup != null
- && npfeat.featureGroup.equals(col.featureGroupName))
+ if (col.featureGroupName == null || (npfeat.featureGroup != null
+ && npfeat.featureGroup.equals(col.featureGroupName)))
{
Color fg = Color.black;
Color bg = Color.white;
}
if (col.DbRefName != null)
{
- for (DBRefEntryI dbr : seq.getDBRefs())
+ for (DBRefEntryI dbr : dseq.getDBRefs())
{
if (dbr.getSource().equals(col.DbRefName))
{