}\r
} catch (Exception ex)\r
{\r
- debug(\r
- "Exception whilst setting default feature sources from registry and local preferences.",\r
+ debug("Exception whilst setting default feature sources from registry and local preferences.",\r
ex);\r
}\r
}\r
for (int i = 0; i < features.length; i++)\r
{\r
// standard DAS feature-> jalview sequence feature transformation\r
- SequenceFeature f = newSequenceFeature(features[i], source\r
- .getNickname());\r
+ SequenceFeature f = newSequenceFeature(features[i],\r
+ source.getNickname());\r
if (!parseSeqFeature(seq, f, features[i], source))\r
{\r
if (dbref.getMap() != null && f.getBegin() > 0\r
for (int i = 0; i < features.length; i++)\r
{\r
// standard DAS feature-> jalview sequence feature transformation\r
- SequenceFeature f = newSequenceFeature(features[i], source\r
- .getNickname());\r
+ SequenceFeature f = newSequenceFeature(features[i],\r
+ source.getNickname());\r
if (!parseSeqFeature(seq, f, features[i], source))\r
{\r
// just add as a simple sequence feature\r
{\r
}\r
\r
- SequenceFeature f = new SequenceFeature((String) dasfeature\r
- .get("TYPE"), desc, start, end, score, nickname);\r
+ SequenceFeature f = new SequenceFeature(\r
+ (String) dasfeature.get("TYPE"), desc, start, end, score,\r
+ nickname);\r
\r
if (dasfeature.containsKey("LINK"))\r
{\r