/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
import java.awt.Component;
import java.awt.Cursor;
import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.awt.event.ItemEvent;
-import java.awt.event.ItemListener;
-import java.io.BufferedOutputStream;
-import java.io.BufferedReader;
-import java.io.InputStreamReader;
-import java.io.OutputStreamWriter;
-import java.io.PrintWriter;
-import java.io.StringWriter;
import java.io.UnsupportedEncodingException;
import java.net.URL;
import java.net.URLEncoder;
-import java.nio.charset.Charset;
-import java.nio.charset.CharsetEncoder;
import java.util.Hashtable;
import java.util.Map;
import java.util.Vector;
import javax.xml.parsers.SAXParser;
import javax.xml.parsers.SAXParserFactory;
-import org.apache.axis.utils.StringUtils;
-import org.apache.http.client.utils.URLEncodedUtils;
-import org.apache.http.entity.StringEntity;
import org.xml.sax.Attributes;
import org.xml.sax.SAXException;
import org.xml.sax.helpers.DefaultHandler;
System.err.println("Adding entry for " + wfname + " " + description);
if (wfname.toLowerCase().indexOf("funcnet") == -1)
{
- description = Pattern.compile("\\s+",Pattern.MULTILINE).matcher(description).replaceAll(" ");
+ description = Pattern.compile("\\s+", Pattern.MULTILINE)
+ .matcher(description).replaceAll(" ");
groupURLdescr.addElement(description);
groupURLdescr.addElement(description);
- String urlstub=wfname;
- if (wfname.indexOf(" ")>-1)
+ String urlstub = wfname;
+ if (wfname.indexOf(" ") > -1)
{
- // make the name safe!
- try {
- urlstub = URLEncoder.encode(wfname,"utf-8");
- } catch (UnsupportedEncodingException e) {
- // TODO Auto-generated catch block
- e.printStackTrace();
- }
+ // make the name safe!
+ try
+ {
+ urlstub = URLEncoder.encode(wfname, "utf-8");
+ } catch (UnsupportedEncodingException e)
+ {
+ // TODO Auto-generated catch block
+ e.printStackTrace();
+ }
}
groupURLLinks
.addElement(wfname
return;
}
}
- try {
+ try
+ {
descr = HtmlEncoder.encode(descr);
- } catch (Exception e){};
-
+ } catch (Exception e)
+ {
+ }
+ ;
+
boolean seqsorids = (urlgenerator.getGroupURLType() & urlgenerator.SEQUENCEIDS) == 0;
int i = urlgenerator.getNumberInvolved(urlstub);
JMenuItem item = new JMenuItem(label);