-/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
- * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
- * \r
- * This program is free software; you can redistribute it and/or\r
- * modify it under the terms of the GNU General Public License\r
- * as published by the Free Software Foundation; either version 2\r
- * of the License, or (at your option) any later version.\r
- * \r
- * This program is distributed in the hope that it will be useful,\r
- * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
- * GNU General Public License for more details.\r
- * \r
- * You should have received a copy of the GNU General Public License\r
- * along with this program; if not, write to the Free Software\r
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
- */\r
-package jalview.ws.dbsources;\r
-\r
-import jalview.ws.seqfetcher.DbSourceProxy;\r
-\r
-/**\r
- * flyweight class specifying retrieval of Full family alignments from PFAM\r
- * \r
- */\r
-public class PfamFull extends Pfam implements DbSourceProxy\r
-{\r
- public PfamFull()\r
- {\r
- super();\r
- }\r
-\r
- /*\r
- * (non-Javadoc)\r
- * \r
- * @see jalview.ws.dbsources.Pfam#getPFAMURL()\r
- */\r
- protected String getPFAMURL()\r
- {\r
- return "http://pfam.sanger.ac.uk/family/alignment/download/format?alnType=full&format=stockholm&order=t&case=l&gaps=default&entry=";\r
- }\r
-\r
- /*\r
- * (non-Javadoc)\r
- * \r
- * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()\r
- */\r
- public String getDbName()\r
- {\r
- return "PFAM (Full)";\r
- }\r
-\r
- public String getDbSource()\r
- {\r
- return getDbName(); // so we have unique DbSource string.\r
- }\r
-\r
- public String getTestQuery()\r
- {\r
- return "PF03760";\r
- }\r
-\r
-}\r
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package jalview.ws.dbsources;
+
+/**
+ * flyweight class specifying retrieval of Full family alignments from PFAM
+ *
+ */
+public class PfamFull extends Pfam
+{
+ public PfamFull()
+ {
+ super();
+ }
+
+ @Override
+ public String getURLSuffix()
+ {
+ return "/alignment/full" + GZIPPED;
+ }
+
+ /*
+ * (non-Javadoc)
+ *
+ * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()
+ */
+ @Override
+ public String getDbName()
+ {
+ return "PFAM (Full)";
+ }
+
+ @Override
+ public String getDbSource()
+ {
+ return getDbName(); // so we have unique DbSource string.
+ }
+
+ @Override
+ public String getTestQuery()
+ {
+ return "PF03760";
+ }
+
+ @Override
+ public String getDbVersion()
+ {
+ return null;
+ }
+
+ @Override
+ public int getTier()
+ {
+ return 0;
+ }
+}