/*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
public String[] getSupportedDb()
{
if (FETCHABLEDBS == null)
+ {
return null;
+ }
String[] sf = new String[FETCHABLEDBS.size()];
Enumeration e = FETCHABLEDBS.keys();
int i = 0;
{
String db = (String) e.nextElement();
if (source.compareToIgnoreCase(db) == 0)
+ {
return true;
+ }
}
jalview.bin.Cache.log.warn("isFetchable doesn't know about '" + source
+ "'");
*/
System.out.println(hdr);
if (rrb != null)
+ {
System.out.println(rrb);
+ }
System.out.println("# end of " + hdr);
}
* @param dbSourceProxy
* reference for class implementing
* jalview.ws.seqfetcher.DbSourceProxy
- * @throws java.lang.IllegalArgumentException
- * if class does not implement jalview.ws.seqfetcher.DbSourceProxy
*/
- protected void addDBRefSourceImpl(Class dbSourceProxy)
+ protected void addDBRefSourceImpl(
+ Class<? extends DbSourceProxy> dbSourceProxy)
throws java.lang.IllegalArgumentException
{
DbSourceProxy proxy = null;
try
{
- Object proxyObj = dbSourceProxy.getConstructor(null)
- .newInstance(null);
- if (!DbSourceProxy.class.isInstance(proxyObj))
- {
- throw new IllegalArgumentException(
- dbSourceProxy.toString()
- + " does not implement the jalview.ws.seqfetcher.DbSourceProxy");
- }
- proxy = (DbSourceProxy) proxyObj;
+ DbSourceProxy proxyObj = dbSourceProxy.getConstructor().newInstance();
+ proxy = proxyObj;
} catch (IllegalArgumentException e)
{
throw e;
} catch (Exception e)
{
// Serious problems if this happens.
- throw new Error(MessageManager.getString("error.dbrefsource_implementation_exception"), e);
+ throw new Error(
+ MessageManager
+ .getString("error.dbrefsource_implementation_exception"),
+ e);
}
addDbRefSourceImpl(proxy);
}
{
if (!jalview.ws.seqfetcher.DbSourceProxy.class.isAssignableFrom(class1))
{
- throw new Error(MessageManager.formatMessage("error.implementation_error_dbinstance_must_implement_interface", new String[]{class1.toString()}));
+ throw new Error(
+ MessageManager
+ .formatMessage(
+ "error.implementation_error_dbinstance_must_implement_interface",
+ new String[] { class1.toString() }));
}
if (FETCHABLEDBS == null)
{
{
ArrayList<DbSourceProxy> prlist = new ArrayList<DbSourceProxy>();
for (String fetchable : getSupportedDb())
+ {
for (DbSourceProxy pr : getSourceProxy(fetchable))
{
if (class1.isInstance(pr))
prlist.add(pr);
}
}
+ }
if (prlist.size() == 0)
{
return null;