-/*
- * This class was automatically generated with
- * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
- * Schema.
- * $Id$
- */
-
-package org.vamsas.objects.core;
-
- //---------------------------------/
- //- Imported classes and packages -/
-//---------------------------------/
-
-import java.io.IOException;
-import java.io.Reader;
-import java.io.Serializable;
-import java.io.Writer;
-import org.exolab.castor.xml.MarshalException;
-import org.exolab.castor.xml.Marshaller;
-import org.exolab.castor.xml.Unmarshaller;
-import org.exolab.castor.xml.ValidationException;
-import org.xml.sax.ContentHandler;
-
-/**
- * Class AlignmentSequenceAnnotation.
- *
- * @version $Revision$ $Date$
- */
-public class AlignmentSequenceAnnotation extends org.vamsas.objects.core.RangeAnnotation
-implements java.io.Serializable
-{
-
-
- //--------------------------/
- //- Class/Member Variables -/
- //--------------------------/
-
- /**
- * TODO:
- * decide
- * if
- * this
- * flag
- * is
- * redundant
- * -
- * when
- * true
- * it
- * would
- * suggest
- * that
- * the
- * annotationElement
- * values
- * together
- * form
- * a
- * graph
- *
- */
- private boolean _graph;
-
- /**
- * keeps track of state for field: _graph
- */
- private boolean _has_graph;
-
- /**
- * Field _provenance
- */
- private org.vamsas.objects.core.Provenance _provenance;
-
-
- //----------------/
- //- Constructors -/
- //----------------/
-
- public AlignmentSequenceAnnotation()
- {
- super();
- } //-- org.vamsas.objects.core.AlignmentSequenceAnnotation()
-
-
- //-----------/
- //- Methods -/
- //-----------/
-
- /**
- * Method deleteGraph
- *
- */
- public void deleteGraph()
- {
- this._has_graph= false;
- } //-- void deleteGraph()
-
- /**
- * Note: hashCode() has not been overriden
- *
- * @param obj
- * @return boolean
- */
- public boolean equals(java.lang.Object obj)
- {
- if ( this == obj )
- return true;
-
- if (super.equals(obj)==false)
- return false;
-
- if (obj instanceof AlignmentSequenceAnnotation) {
-
- AlignmentSequenceAnnotation temp = (AlignmentSequenceAnnotation)obj;
- if (this._graph != temp._graph)
- return false;
- if (this._has_graph != temp._has_graph)
- return false;
- if (this._provenance != null) {
- if (temp._provenance == null) return false;
- else if (!(this._provenance.equals(temp._provenance)))
- return false;
- }
- else if (temp._provenance != null)
- return false;
- return true;
- }
- return false;
- } //-- boolean equals(java.lang.Object)
-
- /**
- * Returns the value of field 'graph'. The field 'graph' has
- * the following description: TODO:
- * decide
- * if
- * this
- * flag
- * is
- * redundant
- * -
- * when
- * true
- * it
- * would
- * suggest
- * that
- * the
- * annotationElement
- * values
- * together
- * form
- * a
- * graph
- *
- *
- * @return boolean
- * @return the value of field 'graph'.
- */
- public boolean getGraph()
- {
- return this._graph;
- } //-- boolean getGraph()
-
- /**
- * Returns the value of field 'provenance'.
- *
- * @return Provenance
- * @return the value of field 'provenance'.
- */
- public org.vamsas.objects.core.Provenance getProvenance()
- {
- return this._provenance;
- } //-- org.vamsas.objects.core.Provenance getProvenance()
-
- /**
- * Method hasGraph
- *
- *
- *
- * @return boolean
- */
- public boolean hasGraph()
- {
- return this._has_graph;
- } //-- boolean hasGraph()
-
- /**
- * Method isValid
- *
- *
- *
- * @return boolean
- */
- public boolean isValid()
- {
- try {
- validate();
- }
- catch (org.exolab.castor.xml.ValidationException vex) {
- return false;
- }
- return true;
- } //-- boolean isValid()
-
- /**
- * Method marshal
- *
- *
- *
- * @param out
- */
- public void marshal(java.io.Writer out)
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
- {
-
- Marshaller.marshal(this, out);
- } //-- void marshal(java.io.Writer)
-
- /**
- * Method marshal
- *
- *
- *
- * @param handler
- */
- public void marshal(org.xml.sax.ContentHandler handler)
- throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
- {
-
- Marshaller.marshal(this, handler);
- } //-- void marshal(org.xml.sax.ContentHandler)
-
- /**
- * Sets the value of field 'graph'. The field 'graph' has the
- * following description: TODO:
- * decide
- * if
- * this
- * flag
- * is
- * redundant
- * -
- * when
- * true
- * it
- * would
- * suggest
- * that
- * the
- * annotationElement
- * values
- * together
- * form
- * a
- * graph
- *
- *
- * @param graph the value of field 'graph'.
- */
- public void setGraph(boolean graph)
- {
- this._graph = graph;
- this._has_graph = true;
- } //-- void setGraph(boolean)
-
- /**
- * Sets the value of field 'provenance'.
- *
- * @param provenance the value of field 'provenance'.
- */
- public void setProvenance(org.vamsas.objects.core.Provenance provenance)
- {
- this._provenance = provenance;
- } //-- void setProvenance(org.vamsas.objects.core.Provenance)
-
- /**
- * Method unmarshal
- *
- *
- *
- * @param reader
- * @return RangeType
- */
- public static org.vamsas.objects.core.RangeType unmarshal(java.io.Reader reader)
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
- {
- return (org.vamsas.objects.core.AlignmentSequenceAnnotation) Unmarshaller.unmarshal(org.vamsas.objects.core.AlignmentSequenceAnnotation.class, reader);
- } //-- org.vamsas.objects.core.RangeType unmarshal(java.io.Reader)
-
- /**
- * Method validate
- *
- */
- public void validate()
- throws org.exolab.castor.xml.ValidationException
- {
- org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
- validator.validate(this);
- } //-- void validate()
-
-}
+/*\r
+ * This class was automatically generated with \r
+ * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML\r
+ * Schema.\r
+ * $Id$\r
+ */\r
+\r
+package org.vamsas.objects.core;\r
+\r
+ //---------------------------------/\r
+ //- Imported classes and packages -/\r
+//---------------------------------/\r
+\r
+import java.io.IOException;\r
+import java.io.Reader;\r
+import java.io.Serializable;\r
+import java.io.Writer;\r
+import org.exolab.castor.xml.MarshalException;\r
+import org.exolab.castor.xml.Marshaller;\r
+import org.exolab.castor.xml.Unmarshaller;\r
+import org.exolab.castor.xml.ValidationException;\r
+import org.xml.sax.ContentHandler;\r
+\r
+/**\r
+ * Class AlignmentSequenceAnnotation.\r
+ * \r
+ * @version $Revision$ $Date$\r
+ */\r
+public class AlignmentSequenceAnnotation extends org.vamsas.objects.core.RangeAnnotation \r
+implements java.io.Serializable\r
+{\r
+\r
+\r
+ //--------------------------/\r
+ //- Class/Member Variables -/\r
+ //--------------------------/\r
+\r
+ /**\r
+ * TODO:\r
+ * decide\r
+ * if\r
+ * this\r
+ * flag\r
+ * is\r
+ * redundant\r
+ * -\r
+ * when\r
+ * true\r
+ * it\r
+ * would\r
+ * suggest\r
+ * that\r
+ * the\r
+ * annotationElement\r
+ * values\r
+ * together\r
+ * form\r
+ * a\r
+ * graph\r
+ * \r
+ */\r
+ private boolean _graph;\r
+\r
+ /**\r
+ * keeps track of state for field: _graph\r
+ */\r
+ private boolean _has_graph;\r
+\r
+ /**\r
+ * Field _provenance\r
+ */\r
+ private org.vamsas.objects.core.Provenance _provenance;\r
+\r
+\r
+ //----------------/\r
+ //- Constructors -/\r
+ //----------------/\r
+\r
+ public AlignmentSequenceAnnotation() \r
+ {\r
+ super();\r
+ } //-- org.vamsas.objects.core.AlignmentSequenceAnnotation()\r
+\r
+\r
+ //-----------/\r
+ //- Methods -/\r
+ //-----------/\r
+\r
+ /**\r
+ * Method deleteGraph\r
+ * \r
+ */\r
+ public void deleteGraph()\r
+ {\r
+ this._has_graph= false;\r
+ } //-- void deleteGraph() \r
+\r
+ /**\r
+ * Note: hashCode() has not been overriden\r
+ * \r
+ * @param obj\r
+ * @return boolean\r
+ */\r
+ public boolean equals(java.lang.Object obj)\r
+ {\r
+ if ( this == obj )\r
+ return true;\r
+ \r
+ if (super.equals(obj)==false)\r
+ return false;\r
+ \r
+ if (obj instanceof AlignmentSequenceAnnotation) {\r
+ \r
+ AlignmentSequenceAnnotation temp = (AlignmentSequenceAnnotation)obj;\r
+ if (this._graph != temp._graph)\r
+ return false;\r
+ if (this._has_graph != temp._has_graph)\r
+ return false;\r
+ if (this._provenance != null) {\r
+ if (temp._provenance == null) return false;\r
+ else if (!(this._provenance.equals(temp._provenance))) \r
+ return false;\r
+ }\r
+ else if (temp._provenance != null)\r
+ return false;\r
+ return true;\r
+ }\r
+ return false;\r
+ } //-- boolean equals(java.lang.Object) \r
+\r
+ /**\r
+ * Returns the value of field 'graph'. The field 'graph' has\r
+ * the following description: TODO:\r
+ * decide\r
+ * if\r
+ * this\r
+ * flag\r
+ * is\r
+ * redundant\r
+ * -\r
+ * when\r
+ * true\r
+ * it\r
+ * would\r
+ * suggest\r
+ * that\r
+ * the\r
+ * annotationElement\r
+ * values\r
+ * together\r
+ * form\r
+ * a\r
+ * graph\r
+ * \r
+ * \r
+ * @return boolean\r
+ * @return the value of field 'graph'.\r
+ */\r
+ public boolean getGraph()\r
+ {\r
+ return this._graph;\r
+ } //-- boolean getGraph() \r
+\r
+ /**\r
+ * Returns the value of field 'provenance'.\r
+ * \r
+ * @return Provenance\r
+ * @return the value of field 'provenance'.\r
+ */\r
+ public org.vamsas.objects.core.Provenance getProvenance()\r
+ {\r
+ return this._provenance;\r
+ } //-- org.vamsas.objects.core.Provenance getProvenance() \r
+\r
+ /**\r
+ * Method hasGraph\r
+ * \r
+ * \r
+ * \r
+ * @return boolean\r
+ */\r
+ public boolean hasGraph()\r
+ {\r
+ return this._has_graph;\r
+ } //-- boolean hasGraph() \r
+\r
+ /**\r
+ * Method isValid\r
+ * \r
+ * \r
+ * \r
+ * @return boolean\r
+ */\r
+ public boolean isValid()\r
+ {\r
+ try {\r
+ validate();\r
+ }\r
+ catch (org.exolab.castor.xml.ValidationException vex) {\r
+ return false;\r
+ }\r
+ return true;\r
+ } //-- boolean isValid() \r
+\r
+ /**\r
+ * Method marshal\r
+ * \r
+ * \r
+ * \r
+ * @param out\r
+ */\r
+ public void marshal(java.io.Writer out)\r
+ throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
+ {\r
+ \r
+ Marshaller.marshal(this, out);\r
+ } //-- void marshal(java.io.Writer) \r
+\r
+ /**\r
+ * Method marshal\r
+ * \r
+ * \r
+ * \r
+ * @param handler\r
+ */\r
+ public void marshal(org.xml.sax.ContentHandler handler)\r
+ throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
+ {\r
+ \r
+ Marshaller.marshal(this, handler);\r
+ } //-- void marshal(org.xml.sax.ContentHandler) \r
+\r
+ /**\r
+ * Sets the value of field 'graph'. The field 'graph' has the\r
+ * following description: TODO:\r
+ * decide\r
+ * if\r
+ * this\r
+ * flag\r
+ * is\r
+ * redundant\r
+ * -\r
+ * when\r
+ * true\r
+ * it\r
+ * would\r
+ * suggest\r
+ * that\r
+ * the\r
+ * annotationElement\r
+ * values\r
+ * together\r
+ * form\r
+ * a\r
+ * graph\r
+ * \r
+ * \r
+ * @param graph the value of field 'graph'.\r
+ */\r
+ public void setGraph(boolean graph)\r
+ {\r
+ this._graph = graph;\r
+ this._has_graph = true;\r
+ } //-- void setGraph(boolean) \r
+\r
+ /**\r
+ * Sets the value of field 'provenance'.\r
+ * \r
+ * @param provenance the value of field 'provenance'.\r
+ */\r
+ public void setProvenance(org.vamsas.objects.core.Provenance provenance)\r
+ {\r
+ this._provenance = provenance;\r
+ } //-- void setProvenance(org.vamsas.objects.core.Provenance) \r
+\r
+ /**\r
+ * Method unmarshal\r
+ * \r
+ * \r
+ * \r
+ * @param reader\r
+ * @return RangeType\r
+ */\r
+ public static org.vamsas.objects.core.RangeType unmarshal(java.io.Reader reader)\r
+ throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
+ {\r
+ return (org.vamsas.objects.core.AlignmentSequenceAnnotation) Unmarshaller.unmarshal(org.vamsas.objects.core.AlignmentSequenceAnnotation.class, reader);\r
+ } //-- org.vamsas.objects.core.RangeType unmarshal(java.io.Reader) \r
+\r
+ /**\r
+ * Method validate\r
+ * \r
+ */\r
+ public void validate()\r
+ throws org.exolab.castor.xml.ValidationException\r
+ {\r
+ org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
+ validator.validate(this);\r
+ } //-- void validate() \r
+\r
+}\r
git://source.jalview.org / vamsas.git / blobdiff