refactored schema (SequenceSet to DataSet and SequenceSetAnnotation to DataSetAnnotat...

[vamsas.git] / src / org / vamsas / objects / core / DataSetAnnotations.java

diff --git a/src/org/vamsas/objects/core/SequenceSetAnnotations.java b/src/org/vamsas/objects/core/DataSetAnnotations.java
similarity index 96%
rename from src/org/vamsas/objects/core/SequenceSetAnnotations.java
rename to src/org/vamsas/objects/core/DataSetAnnotations.java
index 04e249d..60f2d84 100644 (file)
--- a/src/org/vamsas/objects/core/SequenceSetAnnotations.java
+++ b/src/org/vamsas/objects/core/DataSetAnnotations.java
@@ -24,11 +24,11 @@ import org.exolab.castor.xml.ValidationException;
 import org.xml.sax.ContentHandler;
 
 /**
- * Class SequenceSetAnnotations.
+ * Class DataSetAnnotations.
  * 
  * @version $Revision$ $Date$
  */
-public class SequenceSetAnnotations extends org.vamsas.client.object 
+public class DataSetAnnotations extends org.vamsas.client.object 
 implements java.io.Serializable
 {
 
@@ -87,12 +87,12 @@ implements java.io.Serializable
      //- Constructors -/
     //----------------/
 
-    public SequenceSetAnnotations() 
+    public DataSetAnnotations() 
      {
         super();
         _annotationElementList = new Vector();
         _provenanceList = new Vector();
-    } //-- org.vamsas.objects.core.SequenceSetAnnotations()
+    } //-- org.vamsas.objects.core.DataSetAnnotations()
 
 
       //-----------/
@@ -191,9 +191,9 @@ implements java.io.Serializable
         if (super.equals(obj)==false)
             return false;
         
-        if (obj instanceof SequenceSetAnnotations) {
+        if (obj instanceof DataSetAnnotations) {
         
-            SequenceSetAnnotations temp = (SequenceSetAnnotations)obj;
+            DataSetAnnotations temp = (DataSetAnnotations)obj;
             if (this._type != null) {
                 if (temp._type == null) return false;
                 else if (!(this._type.equals(temp._type))) 
@@ -673,13 +673,13 @@ implements java.io.Serializable
      * 
      * 
      * @param reader
-     * @return SequenceSetAnnotations
+     * @return DataSetAnnotations
      */
-    public static org.vamsas.objects.core.SequenceSetAnnotations unmarshal(java.io.Reader reader)
+    public static org.vamsas.objects.core.DataSetAnnotations unmarshal(java.io.Reader reader)
         throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
     {
-        return (org.vamsas.objects.core.SequenceSetAnnotations) Unmarshaller.unmarshal(org.vamsas.objects.core.SequenceSetAnnotations.class, reader);
-    } //-- org.vamsas.objects.core.SequenceSetAnnotations unmarshal(java.io.Reader) 
+        return (org.vamsas.objects.core.DataSetAnnotations) Unmarshaller.unmarshal(org.vamsas.objects.core.DataSetAnnotations.class, reader);
+    } //-- org.vamsas.objects.core.DataSetAnnotations unmarshal(java.io.Reader) 
 
     /**
      * Method validate