import java.io.Reader;
import java.io.Serializable;
import java.io.Writer;
+import java.util.Enumeration;
+import java.util.Vector;
import org.exolab.castor.xml.MarshalException;
import org.exolab.castor.xml.Marshaller;
import org.exolab.castor.xml.Unmarshaller;
//--------------------------/
/**
- * Field _id
+ * Primary Key for vamsas object
+ * referencing
+ *
*/
private java.lang.String _id;
/**
- * Field _user
+ * Who
+ *
*/
private java.lang.String _user;
/**
- * Field _action
+ * With which application
+ *
+ */
+ private java.lang.String _app;
+
+ /**
+ * Did what
+ *
*/
private java.lang.String _action;
/**
- * Field _date
+ * When
+ *
*/
private org.exolab.castor.types.Date _date;
+ /**
+ * additional information
+ *
+ */
+ private java.util.Vector _propertyList;
+
+ /**
+ * parameter for the action
+ *
+ */
+ private java.util.Vector _paramList;
+
+ /**
+ * bioinformatic objects input to
+ * action
+ *
+ */
+ private java.util.Vector _inputList;
+
//----------------/
//- Constructors -/
public Entry()
{
super();
+ _propertyList = new Vector();
+ _paramList = new Vector();
+ _inputList = new Vector();
} //-- org.vamsas.objects.core.Entry()
//-----------/
/**
+ * Method addInput
+ *
+ *
+ *
+ * @param vInput
+ */
+ public void addInput(org.vamsas.objects.core.Input vInput)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ _inputList.addElement(vInput);
+ } //-- void addInput(org.vamsas.objects.core.Input)
+
+ /**
+ * Method addInput
+ *
+ *
+ *
+ * @param index
+ * @param vInput
+ */
+ public void addInput(int index, org.vamsas.objects.core.Input vInput)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ _inputList.insertElementAt(vInput, index);
+ } //-- void addInput(int, org.vamsas.objects.core.Input)
+
+ /**
+ * Method addParam
+ *
+ *
+ *
+ * @param vParam
+ */
+ public void addParam(org.vamsas.objects.core.Param vParam)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ _paramList.addElement(vParam);
+ } //-- void addParam(org.vamsas.objects.core.Param)
+
+ /**
+ * Method addParam
+ *
+ *
+ *
+ * @param index
+ * @param vParam
+ */
+ public void addParam(int index, org.vamsas.objects.core.Param vParam)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ _paramList.insertElementAt(vParam, index);
+ } //-- void addParam(int, org.vamsas.objects.core.Param)
+
+ /**
+ * Method addProperty
+ *
+ *
+ *
+ * @param vProperty
+ */
+ public void addProperty(org.vamsas.objects.core.Property vProperty)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ _propertyList.addElement(vProperty);
+ } //-- void addProperty(org.vamsas.objects.core.Property)
+
+ /**
+ * Method addProperty
+ *
+ *
+ *
+ * @param index
+ * @param vProperty
+ */
+ public void addProperty(int index, org.vamsas.objects.core.Property vProperty)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ _propertyList.insertElementAt(vProperty, index);
+ } //-- void addProperty(int, org.vamsas.objects.core.Property)
+
+ /**
+ * Method enumerateInput
+ *
+ *
+ *
+ * @return Enumeration
+ */
+ public java.util.Enumeration enumerateInput()
+ {
+ return _inputList.elements();
+ } //-- java.util.Enumeration enumerateInput()
+
+ /**
+ * Method enumerateParam
+ *
+ *
+ *
+ * @return Enumeration
+ */
+ public java.util.Enumeration enumerateParam()
+ {
+ return _paramList.elements();
+ } //-- java.util.Enumeration enumerateParam()
+
+ /**
+ * Method enumerateProperty
+ *
+ *
+ *
+ * @return Enumeration
+ */
+ public java.util.Enumeration enumerateProperty()
+ {
+ return _propertyList.elements();
+ } //-- java.util.Enumeration enumerateProperty()
+
+ /**
* Note: hashCode() has not been overriden
*
* @param obj
}
else if (temp._user != null)
return false;
+ if (this._app != null) {
+ if (temp._app == null) return false;
+ else if (!(this._app.equals(temp._app)))
+ return false;
+ }
+ else if (temp._app != null)
+ return false;
if (this._action != null) {
if (temp._action == null) return false;
else if (!(this._action.equals(temp._action)))
}
else if (temp._date != null)
return false;
+ if (this._propertyList != null) {
+ if (temp._propertyList == null) return false;
+ else if (!(this._propertyList.equals(temp._propertyList)))
+ return false;
+ }
+ else if (temp._propertyList != null)
+ return false;
+ if (this._paramList != null) {
+ if (temp._paramList == null) return false;
+ else if (!(this._paramList.equals(temp._paramList)))
+ return false;
+ }
+ else if (temp._paramList != null)
+ return false;
+ if (this._inputList != null) {
+ if (temp._inputList == null) return false;
+ else if (!(this._inputList.equals(temp._inputList)))
+ return false;
+ }
+ else if (temp._inputList != null)
+ return false;
return true;
}
return false;
} //-- boolean equals(java.lang.Object)
/**
- * Returns the value of field 'action'.
+ * Returns the value of field 'action'. The field 'action' has
+ * the following description: Did what
+ *
*
* @return String
* @return the value of field 'action'.
} //-- java.lang.String getAction()
/**
- * Returns the value of field 'date'.
+ * Returns the value of field 'app'. The field 'app' has the
+ * following description: With which application
+ *
+ *
+ * @return String
+ * @return the value of field 'app'.
+ */
+ public java.lang.String getApp()
+ {
+ return this._app;
+ } //-- java.lang.String getApp()
+
+ /**
+ * Returns the value of field 'date'. The field 'date' has the
+ * following description: When
+ *
*
* @return Date
* @return the value of field 'date'.
} //-- org.exolab.castor.types.Date getDate()
/**
- * Returns the value of field 'id'.
+ * Returns the value of field 'id'. The field 'id' has the
+ * following description: Primary Key for vamsas object
+ * referencing
+ *
*
* @return String
* @return the value of field 'id'.
} //-- java.lang.String getId()
/**
- * Returns the value of field 'user'.
+ * Method getInput
+ *
+ *
+ *
+ * @param index
+ * @return Input
+ */
+ public org.vamsas.objects.core.Input getInput(int index)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ //-- check bounds for index
+ if ((index < 0) || (index > _inputList.size())) {
+ throw new IndexOutOfBoundsException("getInput: Index value '"+index+"' not in range [0.."+_inputList.size()+ "]");
+ }
+
+ return (org.vamsas.objects.core.Input) _inputList.elementAt(index);
+ } //-- org.vamsas.objects.core.Input getInput(int)
+
+ /**
+ * Method getInput
+ *
+ *
+ *
+ * @return Input
+ */
+ public org.vamsas.objects.core.Input[] getInput()
+ {
+ int size = _inputList.size();
+ org.vamsas.objects.core.Input[] mArray = new org.vamsas.objects.core.Input[size];
+ for (int index = 0; index < size; index++) {
+ mArray[index] = (org.vamsas.objects.core.Input) _inputList.elementAt(index);
+ }
+ return mArray;
+ } //-- org.vamsas.objects.core.Input[] getInput()
+
+ /**
+ * Method getInputCount
+ *
+ *
+ *
+ * @return int
+ */
+ public int getInputCount()
+ {
+ return _inputList.size();
+ } //-- int getInputCount()
+
+ /**
+ * Method getParam
+ *
+ *
+ *
+ * @param index
+ * @return Param
+ */
+ public org.vamsas.objects.core.Param getParam(int index)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ //-- check bounds for index
+ if ((index < 0) || (index > _paramList.size())) {
+ throw new IndexOutOfBoundsException("getParam: Index value '"+index+"' not in range [0.."+_paramList.size()+ "]");
+ }
+
+ return (org.vamsas.objects.core.Param) _paramList.elementAt(index);
+ } //-- org.vamsas.objects.core.Param getParam(int)
+
+ /**
+ * Method getParam
+ *
+ *
+ *
+ * @return Param
+ */
+ public org.vamsas.objects.core.Param[] getParam()
+ {
+ int size = _paramList.size();
+ org.vamsas.objects.core.Param[] mArray = new org.vamsas.objects.core.Param[size];
+ for (int index = 0; index < size; index++) {
+ mArray[index] = (org.vamsas.objects.core.Param) _paramList.elementAt(index);
+ }
+ return mArray;
+ } //-- org.vamsas.objects.core.Param[] getParam()
+
+ /**
+ * Method getParamCount
+ *
+ *
+ *
+ * @return int
+ */
+ public int getParamCount()
+ {
+ return _paramList.size();
+ } //-- int getParamCount()
+
+ /**
+ * Method getProperty
+ *
+ *
+ *
+ * @param index
+ * @return Property
+ */
+ public org.vamsas.objects.core.Property getProperty(int index)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ //-- check bounds for index
+ if ((index < 0) || (index > _propertyList.size())) {
+ throw new IndexOutOfBoundsException("getProperty: Index value '"+index+"' not in range [0.."+_propertyList.size()+ "]");
+ }
+
+ return (org.vamsas.objects.core.Property) _propertyList.elementAt(index);
+ } //-- org.vamsas.objects.core.Property getProperty(int)
+
+ /**
+ * Method getProperty
+ *
+ *
+ *
+ * @return Property
+ */
+ public org.vamsas.objects.core.Property[] getProperty()
+ {
+ int size = _propertyList.size();
+ org.vamsas.objects.core.Property[] mArray = new org.vamsas.objects.core.Property[size];
+ for (int index = 0; index < size; index++) {
+ mArray[index] = (org.vamsas.objects.core.Property) _propertyList.elementAt(index);
+ }
+ return mArray;
+ } //-- org.vamsas.objects.core.Property[] getProperty()
+
+ /**
+ * Method getPropertyCount
+ *
+ *
+ *
+ * @return int
+ */
+ public int getPropertyCount()
+ {
+ return _propertyList.size();
+ } //-- int getPropertyCount()
+
+ /**
+ * Returns the value of field 'user'. The field 'user' has the
+ * following description: Who
+ *
*
* @return String
* @return the value of field 'user'.
} //-- void marshal(org.xml.sax.ContentHandler)
/**
- * Sets the value of field 'action'.
+ * Method removeAllInput
+ *
+ */
+ public void removeAllInput()
+ {
+ _inputList.removeAllElements();
+ } //-- void removeAllInput()
+
+ /**
+ * Method removeAllParam
+ *
+ */
+ public void removeAllParam()
+ {
+ _paramList.removeAllElements();
+ } //-- void removeAllParam()
+
+ /**
+ * Method removeAllProperty
+ *
+ */
+ public void removeAllProperty()
+ {
+ _propertyList.removeAllElements();
+ } //-- void removeAllProperty()
+
+ /**
+ * Method removeInput
+ *
+ *
+ *
+ * @param index
+ * @return Input
+ */
+ public org.vamsas.objects.core.Input removeInput(int index)
+ {
+ java.lang.Object obj = _inputList.elementAt(index);
+ _inputList.removeElementAt(index);
+ return (org.vamsas.objects.core.Input) obj;
+ } //-- org.vamsas.objects.core.Input removeInput(int)
+
+ /**
+ * Method removeParam
+ *
+ *
+ *
+ * @param index
+ * @return Param
+ */
+ public org.vamsas.objects.core.Param removeParam(int index)
+ {
+ java.lang.Object obj = _paramList.elementAt(index);
+ _paramList.removeElementAt(index);
+ return (org.vamsas.objects.core.Param) obj;
+ } //-- org.vamsas.objects.core.Param removeParam(int)
+
+ /**
+ * Method removeProperty
+ *
+ *
+ *
+ * @param index
+ * @return Property
+ */
+ public org.vamsas.objects.core.Property removeProperty(int index)
+ {
+ java.lang.Object obj = _propertyList.elementAt(index);
+ _propertyList.removeElementAt(index);
+ return (org.vamsas.objects.core.Property) obj;
+ } //-- org.vamsas.objects.core.Property removeProperty(int)
+
+ /**
+ * Sets the value of field 'action'. The field 'action' has the
+ * following description: Did what
+ *
*
* @param action the value of field 'action'.
*/
} //-- void setAction(java.lang.String)
/**
- * Sets the value of field 'date'.
+ * Sets the value of field 'app'. The field 'app' has the
+ * following description: With which application
+ *
+ *
+ * @param app the value of field 'app'.
+ */
+ public void setApp(java.lang.String app)
+ {
+ this._app = app;
+ } //-- void setApp(java.lang.String)
+
+ /**
+ * Sets the value of field 'date'. The field 'date' has the
+ * following description: When
+ *
*
* @param date the value of field 'date'.
*/
} //-- void setDate(org.exolab.castor.types.Date)
/**
- * Sets the value of field 'id'.
+ * Sets the value of field 'id'. The field 'id' has the
+ * following description: Primary Key for vamsas object
+ * referencing
+ *
*
* @param id the value of field 'id'.
*/
} //-- void setId(java.lang.String)
/**
- * Sets the value of field 'user'.
+ * Method setInput
+ *
+ *
+ *
+ * @param index
+ * @param vInput
+ */
+ public void setInput(int index, org.vamsas.objects.core.Input vInput)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ //-- check bounds for index
+ if ((index < 0) || (index > _inputList.size())) {
+ throw new IndexOutOfBoundsException("setInput: Index value '"+index+"' not in range [0.."+_inputList.size()+ "]");
+ }
+ _inputList.setElementAt(vInput, index);
+ } //-- void setInput(int, org.vamsas.objects.core.Input)
+
+ /**
+ * Method setInput
+ *
+ *
+ *
+ * @param inputArray
+ */
+ public void setInput(org.vamsas.objects.core.Input[] inputArray)
+ {
+ //-- copy array
+ _inputList.removeAllElements();
+ for (int i = 0; i < inputArray.length; i++) {
+ _inputList.addElement(inputArray[i]);
+ }
+ } //-- void setInput(org.vamsas.objects.core.Input)
+
+ /**
+ * Method setParam
+ *
+ *
+ *
+ * @param index
+ * @param vParam
+ */
+ public void setParam(int index, org.vamsas.objects.core.Param vParam)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ //-- check bounds for index
+ if ((index < 0) || (index > _paramList.size())) {
+ throw new IndexOutOfBoundsException("setParam: Index value '"+index+"' not in range [0.."+_paramList.size()+ "]");
+ }
+ _paramList.setElementAt(vParam, index);
+ } //-- void setParam(int, org.vamsas.objects.core.Param)
+
+ /**
+ * Method setParam
+ *
+ *
+ *
+ * @param paramArray
+ */
+ public void setParam(org.vamsas.objects.core.Param[] paramArray)
+ {
+ //-- copy array
+ _paramList.removeAllElements();
+ for (int i = 0; i < paramArray.length; i++) {
+ _paramList.addElement(paramArray[i]);
+ }
+ } //-- void setParam(org.vamsas.objects.core.Param)
+
+ /**
+ * Method setProperty
+ *
+ *
+ *
+ * @param index
+ * @param vProperty
+ */
+ public void setProperty(int index, org.vamsas.objects.core.Property vProperty)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ //-- check bounds for index
+ if ((index < 0) || (index > _propertyList.size())) {
+ throw new IndexOutOfBoundsException("setProperty: Index value '"+index+"' not in range [0.."+_propertyList.size()+ "]");
+ }
+ _propertyList.setElementAt(vProperty, index);
+ } //-- void setProperty(int, org.vamsas.objects.core.Property)
+
+ /**
+ * Method setProperty
+ *
+ *
+ *
+ * @param propertyArray
+ */
+ public void setProperty(org.vamsas.objects.core.Property[] propertyArray)
+ {
+ //-- copy array
+ _propertyList.removeAllElements();
+ for (int i = 0; i < propertyArray.length; i++) {
+ _propertyList.addElement(propertyArray[i]);
+ }
+ } //-- void setProperty(org.vamsas.objects.core.Property)
+
+ /**
+ * Sets the value of field 'user'. The field 'user' has the
+ * following description: Who
+ *
*
* @param user the value of field 'user'.
*/
git://source.jalview.org / vamsas.git / blobdiff