made vamsas a proper root element in schema and added example document.

[vamsas.git] / src / org / vamsas / objects / core / SequenceDescriptor.java

diff --git a/src/org/vamsas/objects/core/SequenceDescriptor.java b/src/org/vamsas/objects/core/SequenceDescriptor.java
index 202b67f..6f1d48d 100644 (file)
--- a/src/org/vamsas/objects/core/SequenceDescriptor.java
+++ b/src/org/vamsas/objects/core/SequenceDescriptor.java
@@ -59,11 +59,50 @@ public class SequenceDescriptor extends org.vamsas.objects.core.SequenceTypeDesc
         setExtendsWithoutFlatten(new org.vamsas.objects.core.SequenceTypeDescriptor());
         nsURI = "http://www.vamsas.org";
         xmlName = "Sequence";
+        
+        //-- set grouping compositor
+        setCompositorAsSequence();
         org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;
         org.exolab.castor.mapping.FieldHandler             handler        = null;
         org.exolab.castor.xml.FieldValidator               fieldValidator = null;
         //-- initialize attribute descriptors
         
+        //-- _id
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_id", "id", org.exolab.castor.xml.NodeType.Attribute);
+        this.identity = desc;
+        handler = new org.exolab.castor.xml.XMLFieldHandler() {
+            public java.lang.Object getValue( java.lang.Object object ) 
+                throws IllegalStateException
+            {
+                Sequence target = (Sequence) object;
+                return target.getId();
+            }
+            public void setValue( java.lang.Object object, java.lang.Object value) 
+                throws IllegalStateException, IllegalArgumentException
+            {
+                try {
+                    Sequence target = (Sequence) object;
+                    target.setId( (java.lang.String) value);
+                }
+                catch (java.lang.Exception ex) {
+                    throw new IllegalStateException(ex.toString());
+                }
+            }
+            public java.lang.Object newInstance( java.lang.Object parent ) {
+                return new java.lang.String();
+            }
+        };
+        desc.setHandler(handler);
+        desc.setRequired(true);
+        desc.setMultivalued(false);
+        addFieldDescriptor(desc);
+        
+        //-- validation code for: _id
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();
+        fieldValidator.setMinOccurs(1);
+        { //-- local scope
+        }
+        desc.setValidator(fieldValidator);
         //-- _dictionary
         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_dictionary", "dictionary", org.exolab.castor.xml.NodeType.Attribute);
         desc.setImmutable(true);
@@ -103,6 +142,41 @@ public class SequenceDescriptor extends org.vamsas.objects.core.SequenceTypeDesc
         desc.setValidator(fieldValidator);
         //-- initialize element descriptors
         
+        //-- _dbRefList
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(org.vamsas.objects.core.DbRef.class, "_dbRefList", "dbRef", org.exolab.castor.xml.NodeType.Element);
+        handler = new org.exolab.castor.xml.XMLFieldHandler() {
+            public java.lang.Object getValue( java.lang.Object object ) 
+                throws IllegalStateException
+            {
+                Sequence target = (Sequence) object;
+                return target.getDbRef();
+            }
+            public void setValue( java.lang.Object object, java.lang.Object value) 
+                throws IllegalStateException, IllegalArgumentException
+            {
+                try {
+                    Sequence target = (Sequence) object;
+                    target.addDbRef( (org.vamsas.objects.core.DbRef) value);
+                }
+                catch (java.lang.Exception ex) {
+                    throw new IllegalStateException(ex.toString());
+                }
+            }
+            public java.lang.Object newInstance( java.lang.Object parent ) {
+                return new org.vamsas.objects.core.DbRef();
+            }
+        };
+        desc.setHandler(handler);
+        desc.setNameSpaceURI("http://www.vamsas.org");
+        desc.setMultivalued(true);
+        addFieldDescriptor(desc);
+        
+        //-- validation code for: _dbRefList
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();
+        fieldValidator.setMinOccurs(0);
+        { //-- local scope
+        }
+        desc.setValidator(fieldValidator);
     } //-- org.vamsas.objects.core.SequenceDescriptor()