private java.lang.String _id;
/**
- * Field _newickFormatList
+ * Field _title
*/
- private java.util.Vector _newickFormatList;
+ private java.lang.String _title;
+
+ /**
+ * Field _newickList
+ */
+ private java.util.Vector _newickList;
/**
* Field _provenance
public Tree()
{
super();
- _newickFormatList = new Vector();
+ _newickList = new Vector();
} //-- org.vamsas.objects.core.Tree()
//-----------/
/**
- * Method addNewickFormat
+ * Method addNewick
*
*
*
- * @param vNewickFormat
+ * @param vNewick
*/
- public void addNewickFormat(java.lang.String vNewickFormat)
+ public void addNewick(org.vamsas.objects.core.Newick vNewick)
throws java.lang.IndexOutOfBoundsException
{
- _newickFormatList.addElement(vNewickFormat);
- } //-- void addNewickFormat(java.lang.String)
+ _newickList.addElement(vNewick);
+ } //-- void addNewick(org.vamsas.objects.core.Newick)
/**
- * Method addNewickFormat
+ * Method addNewick
*
*
*
* @param index
- * @param vNewickFormat
+ * @param vNewick
*/
- public void addNewickFormat(int index, java.lang.String vNewickFormat)
+ public void addNewick(int index, org.vamsas.objects.core.Newick vNewick)
throws java.lang.IndexOutOfBoundsException
{
- _newickFormatList.insertElementAt(vNewickFormat, index);
- } //-- void addNewickFormat(int, java.lang.String)
+ _newickList.insertElementAt(vNewick, index);
+ } //-- void addNewick(int, org.vamsas.objects.core.Newick)
/**
- * Method enumerateNewickFormat
+ * Method enumerateNewick
*
*
*
* @return Enumeration
*/
- public java.util.Enumeration enumerateNewickFormat()
+ public java.util.Enumeration enumerateNewick()
{
- return _newickFormatList.elements();
- } //-- java.util.Enumeration enumerateNewickFormat()
+ return _newickList.elements();
+ } //-- java.util.Enumeration enumerateNewick()
/**
* Note: hashCode() has not been overriden
}
else if (temp._id != null)
return false;
- if (this._newickFormatList != null) {
- if (temp._newickFormatList == null) return false;
- else if (!(this._newickFormatList.equals(temp._newickFormatList)))
+ if (this._title != null) {
+ if (temp._title == null) return false;
+ else if (!(this._title.equals(temp._title)))
+ return false;
+ }
+ else if (temp._title != null)
+ return false;
+ if (this._newickList != null) {
+ if (temp._newickList == null) return false;
+ else if (!(this._newickList.equals(temp._newickList)))
return false;
}
- else if (temp._newickFormatList != null)
+ else if (temp._newickList != null)
return false;
if (this._provenance != null) {
if (temp._provenance == null) return false;
} //-- java.lang.String getId()
/**
- * Method getNewickFormat
+ * Method getNewick
*
*
*
* @param index
- * @return String
+ * @return Newick
*/
- public java.lang.String getNewickFormat(int index)
+ public org.vamsas.objects.core.Newick getNewick(int index)
throws java.lang.IndexOutOfBoundsException
{
//-- check bounds for index
- if ((index < 0) || (index > _newickFormatList.size())) {
- throw new IndexOutOfBoundsException("getNewickFormat: Index value '"+index+"' not in range [0.."+_newickFormatList.size()+ "]");
+ if ((index < 0) || (index > _newickList.size())) {
+ throw new IndexOutOfBoundsException("getNewick: Index value '"+index+"' not in range [0.."+_newickList.size()+ "]");
}
- return (String)_newickFormatList.elementAt(index);
- } //-- java.lang.String getNewickFormat(int)
+ return (org.vamsas.objects.core.Newick) _newickList.elementAt(index);
+ } //-- org.vamsas.objects.core.Newick getNewick(int)
/**
- * Method getNewickFormat
+ * Method getNewick
*
*
*
- * @return String
+ * @return Newick
*/
- public java.lang.String[] getNewickFormat()
+ public org.vamsas.objects.core.Newick[] getNewick()
{
- int size = _newickFormatList.size();
- java.lang.String[] mArray = new java.lang.String[size];
+ int size = _newickList.size();
+ org.vamsas.objects.core.Newick[] mArray = new org.vamsas.objects.core.Newick[size];
for (int index = 0; index < size; index++) {
- mArray[index] = (String)_newickFormatList.elementAt(index);
+ mArray[index] = (org.vamsas.objects.core.Newick) _newickList.elementAt(index);
}
return mArray;
- } //-- java.lang.String[] getNewickFormat()
+ } //-- org.vamsas.objects.core.Newick[] getNewick()
/**
- * Method getNewickFormatCount
+ * Method getNewickCount
*
*
*
* @return int
*/
- public int getNewickFormatCount()
+ public int getNewickCount()
{
- return _newickFormatList.size();
- } //-- int getNewickFormatCount()
+ return _newickList.size();
+ } //-- int getNewickCount()
/**
* Returns the value of field 'provenance'.
} //-- org.vamsas.objects.core.Provenance getProvenance()
/**
+ * Returns the value of field 'title'.
+ *
+ * @return String
+ * @return the value of field 'title'.
+ */
+ public java.lang.String getTitle()
+ {
+ return this._title;
+ } //-- java.lang.String getTitle()
+
+ /**
* Method isValid
*
*
} //-- void marshal(org.xml.sax.ContentHandler)
/**
- * Method removeAllNewickFormat
+ * Method removeAllNewick
*
*/
- public void removeAllNewickFormat()
+ public void removeAllNewick()
{
- _newickFormatList.removeAllElements();
- } //-- void removeAllNewickFormat()
+ _newickList.removeAllElements();
+ } //-- void removeAllNewick()
/**
- * Method removeNewickFormat
+ * Method removeNewick
*
*
*
* @param index
- * @return String
+ * @return Newick
*/
- public java.lang.String removeNewickFormat(int index)
+ public org.vamsas.objects.core.Newick removeNewick(int index)
{
- java.lang.Object obj = _newickFormatList.elementAt(index);
- _newickFormatList.removeElementAt(index);
- return (String)obj;
- } //-- java.lang.String removeNewickFormat(int)
+ java.lang.Object obj = _newickList.elementAt(index);
+ _newickList.removeElementAt(index);
+ return (org.vamsas.objects.core.Newick) obj;
+ } //-- org.vamsas.objects.core.Newick removeNewick(int)
/**
* Sets the value of field 'id'.
} //-- void setId(java.lang.String)
/**
- * Method setNewickFormat
+ * Method setNewick
*
*
*
* @param index
- * @param vNewickFormat
+ * @param vNewick
*/
- public void setNewickFormat(int index, java.lang.String vNewickFormat)
+ public void setNewick(int index, org.vamsas.objects.core.Newick vNewick)
throws java.lang.IndexOutOfBoundsException
{
//-- check bounds for index
- if ((index < 0) || (index > _newickFormatList.size())) {
- throw new IndexOutOfBoundsException("setNewickFormat: Index value '"+index+"' not in range [0.."+_newickFormatList.size()+ "]");
+ if ((index < 0) || (index > _newickList.size())) {
+ throw new IndexOutOfBoundsException("setNewick: Index value '"+index+"' not in range [0.."+_newickList.size()+ "]");
}
- _newickFormatList.setElementAt(vNewickFormat, index);
- } //-- void setNewickFormat(int, java.lang.String)
+ _newickList.setElementAt(vNewick, index);
+ } //-- void setNewick(int, org.vamsas.objects.core.Newick)
/**
- * Method setNewickFormat
+ * Method setNewick
*
*
*
- * @param newickFormatArray
+ * @param newickArray
*/
- public void setNewickFormat(java.lang.String[] newickFormatArray)
+ public void setNewick(org.vamsas.objects.core.Newick[] newickArray)
{
//-- copy array
- _newickFormatList.removeAllElements();
- for (int i = 0; i < newickFormatArray.length; i++) {
- _newickFormatList.addElement(newickFormatArray[i]);
+ _newickList.removeAllElements();
+ for (int i = 0; i < newickArray.length; i++) {
+ _newickList.addElement(newickArray[i]);
}
- } //-- void setNewickFormat(java.lang.String)
+ } //-- void setNewick(org.vamsas.objects.core.Newick)
/**
* Sets the value of field 'provenance'.
} //-- void setProvenance(org.vamsas.objects.core.Provenance)
/**
+ * Sets the value of field 'title'.
+ *
+ * @param title the value of field 'title'.
+ */
+ public void setTitle(java.lang.String title)
+ {
+ this._title = title;
+ } //-- void setTitle(java.lang.String)
+
+ /**
* Method unmarshal
*
*
git://source.jalview.org / vamsas.git / blobdiff