int nseq = 0;
BufferedReader infasta = new BufferedReader(new InputStreamReader(os));
System.err.println("NOT FULLY IMPLEMENTED!"); // TODO: Finish adapting this method
- // TODO: decide on return type - SequenceType is a partly complete vamsas object - either for a dataset or alignment sequence
+ // TODO: decide on return type - SequenceType is a partly complete vamsas Vobject - either for a dataset or alignment sequence
// so could go in either!
String line;
Sequence seq = null;