private java.util.Vector _newickList;
/**
- * node identity and mapping data between tree representations
- * and vamsas document objects
- *
+ * node identity and mapping data between tree
+ * representations and vamsas document objects
*/
private java.util.Vector _treenodeList;
if (obj instanceof Tree) {
Tree temp = (Tree)obj;
+ boolean thcycle;
+ boolean tmcycle;
if (this._id != null) {
if (temp._id == null) return false;
- else if (!(this._id.equals(temp._id)))
- return false;
- }
- else if (temp._id != null)
+ if (this._id != temp._id) {
+ thcycle=org.castor.util.CycleBreaker.startingToCycle(this._id);
+ tmcycle=org.castor.util.CycleBreaker.startingToCycle(temp._id);
+ if (thcycle!=tmcycle) {
+ if (!thcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(this._id); };
+ if (!tmcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(temp._id); };
+ return false;
+ }
+ if (!thcycle) {
+ if (!this._id.equals(temp._id)) {
+ org.castor.util.CycleBreaker.releaseCycleHandle(this._id);
+ org.castor.util.CycleBreaker.releaseCycleHandle(temp._id);
+ return false;
+ }
+ org.castor.util.CycleBreaker.releaseCycleHandle(this._id);
+ org.castor.util.CycleBreaker.releaseCycleHandle(temp._id);
+ }
+ }
+ } else if (temp._id != null)
return false;
if (this._modifiable != null) {
if (temp._modifiable == null) return false;
- else if (!(this._modifiable.equals(temp._modifiable)))
- return false;
- }
- else if (temp._modifiable != null)
+ if (this._modifiable != temp._modifiable) {
+ thcycle=org.castor.util.CycleBreaker.startingToCycle(this._modifiable);
+ tmcycle=org.castor.util.CycleBreaker.startingToCycle(temp._modifiable);
+ if (thcycle!=tmcycle) {
+ if (!thcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(this._modifiable); };
+ if (!tmcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(temp._modifiable); };
+ return false;
+ }
+ if (!thcycle) {
+ if (!this._modifiable.equals(temp._modifiable)) {
+ org.castor.util.CycleBreaker.releaseCycleHandle(this._modifiable);
+ org.castor.util.CycleBreaker.releaseCycleHandle(temp._modifiable);
+ return false;
+ }
+ org.castor.util.CycleBreaker.releaseCycleHandle(this._modifiable);
+ org.castor.util.CycleBreaker.releaseCycleHandle(temp._modifiable);
+ }
+ }
+ } else if (temp._modifiable != null)
return false;
if (this._title != null) {
if (temp._title == null) return false;
- else if (!(this._title.equals(temp._title)))
- return false;
- }
- else if (temp._title != null)
+ if (this._title != temp._title) {
+ thcycle=org.castor.util.CycleBreaker.startingToCycle(this._title);
+ tmcycle=org.castor.util.CycleBreaker.startingToCycle(temp._title);
+ if (thcycle!=tmcycle) {
+ if (!thcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(this._title); };
+ if (!tmcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(temp._title); };
+ return false;
+ }
+ if (!thcycle) {
+ if (!this._title.equals(temp._title)) {
+ org.castor.util.CycleBreaker.releaseCycleHandle(this._title);
+ org.castor.util.CycleBreaker.releaseCycleHandle(temp._title);
+ return false;
+ }
+ org.castor.util.CycleBreaker.releaseCycleHandle(this._title);
+ org.castor.util.CycleBreaker.releaseCycleHandle(temp._title);
+ }
+ }
+ } else if (temp._title != null)
return false;
if (this._newickList != null) {
if (temp._newickList == null) return false;
- else if (!(this._newickList.equals(temp._newickList)))
- return false;
- }
- else if (temp._newickList != null)
+ if (this._newickList != temp._newickList) {
+ thcycle=org.castor.util.CycleBreaker.startingToCycle(this._newickList);
+ tmcycle=org.castor.util.CycleBreaker.startingToCycle(temp._newickList);
+ if (thcycle!=tmcycle) {
+ if (!thcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(this._newickList); };
+ if (!tmcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(temp._newickList); };
+ return false;
+ }
+ if (!thcycle) {
+ if (!this._newickList.equals(temp._newickList)) {
+ org.castor.util.CycleBreaker.releaseCycleHandle(this._newickList);
+ org.castor.util.CycleBreaker.releaseCycleHandle(temp._newickList);
+ return false;
+ }
+ org.castor.util.CycleBreaker.releaseCycleHandle(this._newickList);
+ org.castor.util.CycleBreaker.releaseCycleHandle(temp._newickList);
+ }
+ }
+ } else if (temp._newickList != null)
return false;
if (this._treenodeList != null) {
if (temp._treenodeList == null) return false;
- else if (!(this._treenodeList.equals(temp._treenodeList)))
- return false;
- }
- else if (temp._treenodeList != null)
+ if (this._treenodeList != temp._treenodeList) {
+ thcycle=org.castor.util.CycleBreaker.startingToCycle(this._treenodeList);
+ tmcycle=org.castor.util.CycleBreaker.startingToCycle(temp._treenodeList);
+ if (thcycle!=tmcycle) {
+ if (!thcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(this._treenodeList); };
+ if (!tmcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(temp._treenodeList); };
+ return false;
+ }
+ if (!thcycle) {
+ if (!this._treenodeList.equals(temp._treenodeList)) {
+ org.castor.util.CycleBreaker.releaseCycleHandle(this._treenodeList);
+ org.castor.util.CycleBreaker.releaseCycleHandle(temp._treenodeList);
+ return false;
+ }
+ org.castor.util.CycleBreaker.releaseCycleHandle(this._treenodeList);
+ org.castor.util.CycleBreaker.releaseCycleHandle(temp._treenodeList);
+ }
+ }
+ } else if (temp._treenodeList != null)
return false;
if (this._propertyList != null) {
if (temp._propertyList == null) return false;
- else if (!(this._propertyList.equals(temp._propertyList)))
- return false;
- }
- else if (temp._propertyList != null)
+ if (this._propertyList != temp._propertyList) {
+ thcycle=org.castor.util.CycleBreaker.startingToCycle(this._propertyList);
+ tmcycle=org.castor.util.CycleBreaker.startingToCycle(temp._propertyList);
+ if (thcycle!=tmcycle) {
+ if (!thcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(this._propertyList); };
+ if (!tmcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(temp._propertyList); };
+ return false;
+ }
+ if (!thcycle) {
+ if (!this._propertyList.equals(temp._propertyList)) {
+ org.castor.util.CycleBreaker.releaseCycleHandle(this._propertyList);
+ org.castor.util.CycleBreaker.releaseCycleHandle(temp._propertyList);
+ return false;
+ }
+ org.castor.util.CycleBreaker.releaseCycleHandle(this._propertyList);
+ org.castor.util.CycleBreaker.releaseCycleHandle(temp._propertyList);
+ }
+ }
+ } else if (temp._propertyList != null)
return false;
if (this._provenance != null) {
if (temp._provenance == null) return false;
- else if (!(this._provenance.equals(temp._provenance)))
- return false;
- }
- else if (temp._provenance != null)
+ if (this._provenance != temp._provenance) {
+ thcycle=org.castor.util.CycleBreaker.startingToCycle(this._provenance);
+ tmcycle=org.castor.util.CycleBreaker.startingToCycle(temp._provenance);
+ if (thcycle!=tmcycle) {
+ if (!thcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(this._provenance); };
+ if (!tmcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(temp._provenance); };
+ return false;
+ }
+ if (!thcycle) {
+ if (!this._provenance.equals(temp._provenance)) {
+ org.castor.util.CycleBreaker.releaseCycleHandle(this._provenance);
+ org.castor.util.CycleBreaker.releaseCycleHandle(temp._provenance);
+ return false;
+ }
+ org.castor.util.CycleBreaker.releaseCycleHandle(this._provenance);
+ org.castor.util.CycleBreaker.releaseCycleHandle(temp._provenance);
+ }
+ }
+ } else if (temp._provenance != null)
return false;
return true;
}
int result = super.hashCode();
long tmp;
- if (_id != null) {
+ if (_id != null
+ && !org.castor.util.CycleBreaker.startingToCycle(_id)) {
result = 37 * result + _id.hashCode();
+ org.castor.util.CycleBreaker.releaseCycleHandle(_id);
}
- if (_modifiable != null) {
+ if (_modifiable != null
+ && !org.castor.util.CycleBreaker.startingToCycle(_modifiable)) {
result = 37 * result + _modifiable.hashCode();
+ org.castor.util.CycleBreaker.releaseCycleHandle(_modifiable);
}
- if (_title != null) {
+ if (_title != null
+ && !org.castor.util.CycleBreaker.startingToCycle(_title)) {
result = 37 * result + _title.hashCode();
+ org.castor.util.CycleBreaker.releaseCycleHandle(_title);
}
- if (_newickList != null) {
+ if (_newickList != null
+ && !org.castor.util.CycleBreaker.startingToCycle(_newickList)) {
result = 37 * result + _newickList.hashCode();
+ org.castor.util.CycleBreaker.releaseCycleHandle(_newickList);
}
- if (_treenodeList != null) {
+ if (_treenodeList != null
+ && !org.castor.util.CycleBreaker.startingToCycle(_treenodeList)) {
result = 37 * result + _treenodeList.hashCode();
+ org.castor.util.CycleBreaker.releaseCycleHandle(_treenodeList);
}
- if (_propertyList != null) {
+ if (_propertyList != null
+ && !org.castor.util.CycleBreaker.startingToCycle(_propertyList)) {
result = 37 * result + _propertyList.hashCode();
+ org.castor.util.CycleBreaker.releaseCycleHandle(_propertyList);
}
- if (_provenance != null) {
+ if (_provenance != null
+ && !org.castor.util.CycleBreaker.startingToCycle(_provenance)) {
result = 37 * result + _provenance.hashCode();
+ org.castor.util.CycleBreaker.releaseCycleHandle(_provenance);
}
return result;