return false;
}
Entry[] pe = p.getEntry();
- for (int i=0; i<pe.length; i++)
- outstr.println(pe[i].getDate()+"\t'"+pe[i].getUser()+"'\t"+pe[i].getApp()+"\t'"+pe[i].getAction()+"'");
+ for (int i=0; i<pe.length; i++) {
+ outstr.print(pe[i].getDate()+"\t'"+pe[i].getUser()+"'\t"+pe[i].getApp()+"\t'"+pe[i].getAction()+"' ");
+ outputVobjectState(pe[i], outstr);
+ }
return true;
}
public static boolean appDataEntryReport(AppData appD, VamsasArchiveReader archive, boolean cascade, PrintStream outstr) {
+((r.getId()!=null) ? r.getId():"<none>")
+") contains "+(ds=r.getDataSetCount())+" DataSets, "
+ (tr=r.getTreeCount())+" Global trees\n");
+ outputVobjectState(r, outstr);
if (cascade) {
for (int j=0; j<ds; j++) {
outstr.println("Dataset "+j);
}
return false;
}
+ public static void outputVobjectState(Vobject v, PrintStream outstr) {
+ outstr.print(" (Object is: ");
+ boolean comma=false;
+ if (v.is__stored_in_document()) {
+ outstr.print(" stored");
+ comma=true;
+ }
+ if (v.isNewInDocument()) {
+ if (comma)
+ outstr.print(",");
+ comma=true;
+ outstr.print(" new in document");
+ }
+ if (v.isUpdated()) {
+ if (comma)
+ outstr.print(",");
+ comma=true;
+ outstr.print(" updated since last read");
+ }
+ outstr.println(")");
+ }
public static boolean datasetReport(DataSet ds, boolean cascade, PrintStream outstr) {
if (cascade)
reportProvenance(ds.getProvenance(), outstr);
+ outputVobjectState(ds, outstr);
outstr.println("Dataset contains : "+ds.getSequenceCount()
+" sequences, "+ds.getAlignmentCount()+" alignments and "+ds.getTreeCount()+" trees.");
if (cascade)
if (al!=null && al.length>0) {
for (int i=0; i<al.length; i++) {
outstr.println("Alignment "+i+(al[i].isRegistered() ? " ("+al[i].getVorbaId()+")" : " (unregistered)"));
+ outputVobjectState(al[i], outstr);
if (cascade)
reportProvenance(al[i].getProvenance(), outstr);
outstr.println("Involves "+al[i].getAlignmentSequenceCount()+" sequences, has "
return val;
}
public static boolean treeReport(Tree t, boolean cascade, PrintStream outstr) {
- outstr.println("Tree: '"+t.getTitle()+"'");
+ outstr.print("Tree: '"+t.getTitle()+"' ");
+ outputVobjectState(t, outstr);
return !cascade || reportProvenance(t.getProvenance(), outstr);
}