updated to jalview 2.1 and begun ArchiveClient/VamsasClient/VamsasStore updates.

[jalview.git] / src / vamsas / objects / simple / Alignment_Helper.java

diff --git a/src/vamsas/objects/simple/Alignment_Helper.java b/src/vamsas/objects/simple/Alignment_Helper.java
index 1425a5a..12c4846 100755 (executable)
--- a/src/vamsas/objects/simple/Alignment_Helper.java
+++ b/src/vamsas/objects/simple/Alignment_Helper.java
@@ -5,66 +5,79 @@
  * by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter.
  */
 
+/*
+* Jalview - A Sequence Alignment Editor and Viewer
+* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+*
+* This program is free software; you can redistribute it and/or
+* modify it under the terms of the GNU General Public License
+* as published by the Free Software Foundation; either version 2
+* of the License, or (at your option) any later version.
+*
+* This program is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+* GNU General Public License for more details.
+*
+* You should have received a copy of the GNU General Public License
+* along with this program; if not, write to the Free Software
+* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+*/
 package vamsas.objects.simple;
 
 public class Alignment_Helper {
     // Type metadata
-    private static org.apache.axis.description.TypeDesc typeDesc =
-        new org.apache.axis.description.TypeDesc(Alignment.class, true);
+    private static org.apache.axis.description.TypeDesc typeDesc = new org.apache.axis.description.TypeDesc(Alignment.class,
+            true);
 
     static {
-        typeDesc.setXmlType(new javax.xml.namespace.QName("simple.objects.vamsas", "Alignment"));
+        typeDesc.setXmlType(new javax.xml.namespace.QName(
+                "simple.objects.vamsas", "Alignment"));
+
         org.apache.axis.description.ElementDesc elemField = new org.apache.axis.description.ElementDesc();
         elemField.setFieldName("gapchar");
         elemField.setXmlName(new javax.xml.namespace.QName("", "gapchar"));
-        elemField.setXmlType(new javax.xml.namespace.QName("http://schemas.xmlsoap.org/soap/encoding/", "string"));
+        elemField.setXmlType(new javax.xml.namespace.QName(
+                "http://schemas.xmlsoap.org/soap/encoding/", "string"));
         typeDesc.addFieldDesc(elemField);
         elemField = new org.apache.axis.description.ElementDesc();
         elemField.setFieldName("method");
         elemField.setXmlName(new javax.xml.namespace.QName("", "method"));
-        elemField.setXmlType(new javax.xml.namespace.QName("http://schemas.xmlsoap.org/soap/encoding/", "string"));
+        elemField.setXmlType(new javax.xml.namespace.QName(
+                "http://schemas.xmlsoap.org/soap/encoding/", "string"));
         typeDesc.addFieldDesc(elemField);
         elemField = new org.apache.axis.description.ElementDesc();
         elemField.setFieldName("seqs");
         elemField.setXmlName(new javax.xml.namespace.QName("", "seqs"));
-        elemField.setXmlType(new javax.xml.namespace.QName("simple.objects.vamsas", "SequenceSet"));
-        typeDesc.addFieldDesc(elemField);
-        elemField = new org.apache.axis.description.ElementDesc();
-        elemField.setFieldName("seqsAsArray");
-        elemField.setXmlName(new javax.xml.namespace.QName("", "seqsAsArray"));
-        elemField.setXmlType(new javax.xml.namespace.QName("simple.objects.vamsas", "Sequence"));
+        elemField.setXmlType(new javax.xml.namespace.QName(
+                "simple.objects.vamsas", "SequenceSet"));
         typeDesc.addFieldDesc(elemField);
     }
 
     /**
-     * Return type metadata object
-     */
+ * Return type metadata object
+ */
     public static org.apache.axis.description.TypeDesc getTypeDesc() {
         return typeDesc;
     }
 
     /**
-     * Get Custom Serializer
-     */
+ * Get Custom Serializer
+ */
     public static org.apache.axis.encoding.Serializer getSerializer(
-           java.lang.String mechType, 
-           java.lang.Class _javaType,  
-           javax.xml.namespace.QName _xmlType) {
-        return 
-          new  org.apache.axis.encoding.ser.BeanSerializer(
-            _javaType, _xmlType, typeDesc);
+        java.lang.String mechType, java.lang.Class _javaType,
+        javax.xml.namespace.QName _xmlType) {
+        return new org.apache.axis.encoding.ser.BeanSerializer(_javaType,
+            _xmlType, typeDesc);
     }
 
     /**
-     * Get Custom Deserializer
-     */
+ * Get Custom Deserializer
+ */
     public static org.apache.axis.encoding.Deserializer getDeserializer(
-           java.lang.String mechType, 
-           java.lang.Class _javaType,  
-           javax.xml.namespace.QName _xmlType) {
-        return 
-          new  org.apache.axis.encoding.ser.BeanDeserializer(
-            _javaType, _xmlType, typeDesc);
+        java.lang.String mechType, java.lang.Class _javaType,
+        javax.xml.namespace.QName _xmlType) {
+        return new org.apache.axis.encoding.ser.BeanDeserializer(_javaType,
+            _xmlType, typeDesc);
     }
-
 }