+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.analysis;
import static org.testng.AssertJUnit.assertEquals;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.Sequence;
import jalview.datamodel.SequenceI;
+import jalview.gui.AlignFrame;
+import jalview.gui.JvOptionPane;
import java.util.List;
+import org.testng.annotations.BeforeClass;
import org.testng.annotations.BeforeMethod;
import org.testng.annotations.Test;
public class ParsePropertiesTest
{
+ @BeforeClass(alwaysRun = true)
+ public void setUpJvOptionPane()
+ {
+ JvOptionPane.setInteractiveMode(false);
+ JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+ }
+
private Alignment al;
private ParseProperties pp;
/**
* Construct an alignment with 4 sequences with varying description format
*/
- @BeforeMethod(alwaysRun = true)
+ @BeforeMethod(alwaysRun = true)
public void setUp()
{
- SequenceI[] seqs = new SequenceI[]
- { new Sequence("sq1", "THISISAPLACEHOLDER"),
+ SequenceI[] seqs = new SequenceI[] {
+ new Sequence("sq1", "THISISAPLACEHOLDER"),
new Sequence("sq2", "THISISAPLACEHOLDER"),
new Sequence("sq3", "THISISAPLACEHOLDER"),
new Sequence("sq4", "THISISAPLACEHOLDER") };
* more 'number characters' (0-9+.), i.e. greedily matches any trailing
* numeric part of the string
*/
- @Test(groups ={ "Functional" })
+ @Test(groups = { "Functional" })
public void testGetScoresFromDescription()
{
String regex = ".*([-0-9.+]+)";
* character, followed by at least one 'number character', then any trailing
* characters.
*/
- @Test(groups ={ "Functional" })
+ @Test(groups = { "Functional" })
public void testGetScoresFromDescription_twoScores()
{
String regex = ".*([-0-9.+]+).+([-0-9.+]+).*";
*
* @see AlignFrame.extractScores_actionPerformed
*/
- @Test(groups ={ "Functional" })
+ @Test(groups = { "Functional" })
public void testGetScoresFromDescription_wordBoundaries()
{
String regex = "\\W*([-+eE0-9.]+)";