+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.datamodel;
-import static org.junit.Assert.assertEquals;
+import static org.testng.AssertJUnit.assertEquals;
-import java.util.Arrays;
+import jalview.util.MapList;
-import org.junit.Test;
+import java.util.Arrays;
-import jalview.util.MapList;
+import org.testng.annotations.Test;
/**
* Test class refactored from main method
* trite test of the intersectVisContigs method for a simple DNA -> Protein
* exon map and a range of visContigs
*/
- @Test
+ @Test(groups = { "Functional" })
public void testIntersectVisContigs()
{
- MapList fk = new MapList(new int[]
- { 1, 6, 8, 13, 15, 23 }, new int[]
- { 1, 7 }, 3, 1);
+ MapList fk = new MapList(new int[] { 1, 6, 8, 13, 15, 23 }, new int[] {
+ 1, 7 }, 3, 1);
Mapping m = new Mapping(fk);
- Mapping m_1 = m.intersectVisContigs(new int[]
- { fk.getFromLowest(), fk.getFromHighest() });
- Mapping m_2 = m.intersectVisContigs(new int[]
- { 1, 7, 11, 20 });
+ Mapping m_1 = m.intersectVisContigs(new int[] { fk.getFromLowest(),
+ fk.getFromHighest() });
+ Mapping m_2 = m.intersectVisContigs(new int[] { 1, 7, 11, 20 });
// assertions from output values 'as is', not checked for correctness
- String result = Arrays.deepToString(m_1.map.getFromRanges()
- .toArray());
+ String result = Arrays.deepToString(m_1.map.getFromRanges().toArray());
System.out.println(result);
assertEquals("[[1, 6], [8, 13], [15, 23]]", result);