import static org.testng.AssertJUnit.assertSame;
import static org.testng.AssertJUnit.assertTrue;
+import jalview.gui.JvOptionPane;
+
import java.util.BitSet;
+import org.junit.Assert;
+import org.testng.annotations.BeforeClass;
import org.testng.annotations.Test;
public class SearchResultsTest
{
- @Test(groups = { "Functional" })
- public void testToString()
+ @BeforeClass(alwaysRun = true)
+ public void setUpJvOptionPane()
{
- SequenceI seq = new Sequence("", "abcdefghijklm");
- SearchResultsI sr = new SearchResults();
- sr.addResult(seq, 1, 1);
- assertEquals("0a", sr.toString());
- sr.addResult(seq, 3, 5);
- assertEquals("0a2cde", sr.toString());
-
- seq = new Sequence("", "pqrstuvwxy");
- sr.addResult(seq, 6, 7);
- assertEquals("0a2cde5uv", sr.toString());
+ JvOptionPane.setInteractiveMode(false);
+ JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
}
@Test(groups = { "Functional" })
- public void testGetCharacters()
+ public void testToString()
{
- SequenceI seq = new Sequence("", "abcdefghijklm");
- SearchResults sr = new SearchResults();
+ SequenceI seq = new Sequence("Seq1", "abcdefghijklm");
+ SearchResultsI sr = new SearchResults();
sr.addResult(seq, 1, 1);
- assertEquals("a", sr.getCharacters());
+ assertEquals("[Seq1/1-1]", sr.toString());
sr.addResult(seq, 3, 5);
- assertEquals("acde", sr.getCharacters());
+ assertEquals("[Seq1/1-1, Seq1/3-5]", sr.toString());
- seq = new Sequence("", "pqrstuvwxy");
+ seq = new Sequence("Seq2", "pqrstuvwxy");
sr.addResult(seq, 6, 7);
- assertEquals("acdeuv", sr.getCharacters());
+ assertEquals("[Seq1/1-1, Seq1/3-5, Seq2/6-7]", sr.toString());
}
@Test(groups = { "Functional" })
assertTrue(sr2.equals(sr1)); // reflexive
/*
- * only one result is not empty
+ * if only one result is not empty
*/
sr1.addResult(seq1, 1, 1);
assertTrue(sr1.equals(sr1));
SearchResultsI sr = new SearchResults();
BitSet bs = new BitSet();
- sr.addResult(seq1, 1,1);
- sr.addResult(seq2, 1,2);
+ SearchResultMatchI srm = null;
+ srm = sr.addResult(seq1, 1, 1);
+ Assert.assertNotNull("addResult didn't return Match", srm);
+ srm = sr.addResult(seq2, 1, 2);
+ assertEquals("Sequence reference not set", seq2, srm.getSequence());
+ assertEquals("match start incorrect", 1, srm.getStart());
+ assertEquals("match end incorrect", 2, srm.getEnd());
// set start/end range for groups to cover matches
assertEquals("Didn't mark expected number", 2, bs.cardinality());
assertEquals("Didn't return count of number of bits marked", 2, marked);
assertTrue("Didn't mark expected position (1)", bs.get(0));
- assertTrue("Didn't mark expected position (2)", bs.get(0));
+ assertTrue("Didn't mark expected position (2)", bs.get(1));
/*
* both seq1 and seq2
s2g.setStartRes(1);
s2g.setEndRes(1);
sallg.setEndRes(0);
- BitSet tbs;
- assertEquals(1, sr.markColumns(s2g, tbs = new BitSet()));
- assertEquals(1, sr.markColumns(sallg, tbs = new BitSet()));
+ BitSet tbs = new BitSet();
+ assertEquals("Group start/end didn't select columns to mark",1, sr.markColumns(s2g, tbs));
+ assertEquals("Group start/end didn't select columns to mark", 1, sr.markColumns(sallg, tbs));
+ assertEquals(
+ "Didn't set expected number of columns in total for two successive marks",
+ 2, tbs.cardinality());
}
}