+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.datamodel;
import static org.testng.AssertJUnit.assertEquals;
import static org.testng.AssertJUnit.assertFalse;
+import static org.testng.AssertJUnit.assertSame;
import static org.testng.AssertJUnit.assertTrue;
+import jalview.datamodel.SearchResults.Match;
+
import org.testng.annotations.Test;
public class SearchResultsTest
{
- @Test(groups ={ "Functional" })
+ @Test(groups = { "Functional" })
public void testToString()
{
SequenceI seq = new Sequence("", "abcdefghijklm");
}
@Test(groups = { "Functional" })
+ public void testGetCharacters()
+ {
+ SequenceI seq = new Sequence("", "abcdefghijklm");
+ SearchResults sr = new SearchResults();
+ sr.addResult(seq, 1, 1);
+ assertEquals("a", sr.getCharacters());
+ sr.addResult(seq, 3, 5);
+ assertEquals("acde", sr.getCharacters());
+
+ seq = new Sequence("", "pqrstuvwxy");
+ sr.addResult(seq, 6, 7);
+ assertEquals("acdeuv", sr.getCharacters());
+ }
+
+ @Test(groups = { "Functional" })
public void testEquals()
{
SequenceI seq1 = new Sequence("", "abcdefghijklm");
sr2.addResult(seq1, 6, 8);
assertEquals(sr1.hashCode(), sr2.hashCode());
}
+
+ /**
+ * Verify that SearchResults$Match constructor normalises start/end to the
+ * 'forwards' direction
+ */
+ @Test(groups = { "Functional" })
+ public void testMatchConstructor()
+ {
+ SequenceI seq1 = new Sequence("", "abcdefghijklm");
+ Match m = new SearchResults().new Match(seq1, 2, 5);
+ assertSame(seq1, m.getSequence());
+ assertEquals(2, m.getStart());
+ assertEquals(5, m.getEnd());
+
+ // now a reverse mapping:
+ m = new SearchResults().new Match(seq1, 5, 2);
+ assertSame(seq1, m.getSequence());
+ assertEquals(2, m.getStart());
+ assertEquals(5, m.getEnd());
+ }
}