import static org.testng.Assert.assertEquals;
+import jalview.api.AlignViewportI;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.SequenceGroup;
import jalview.io.DataSourceType;
import jalview.io.FileLoader;
-
import javax.swing.JTextArea;
-import junit.extensions.PA;
-
import org.testng.annotations.Test;
+import junit.extensions.PA;
+
public class PairwiseAlignmentPanelTest
{
@Test(groups = "Functional")
{
AlignFrame af = new FileLoader().LoadFileWaitTillLoaded(
"examples/uniref50.fa", DataSourceType.FILE);
- AlignViewport viewport = af.getViewport();
+ AlignViewportI viewport = af.getViewport();
AlignmentI al = viewport.getAlignment();
/*
PairwiseAlignPanel testee = new PairwiseAlignPanel(viewport);
- String text = ((JTextArea) PA.getValue(testee, "textarea")).getText();
+ String text = ((JTextArea) PA.getValue(testee, "textarea")).getText().replace("\r\n", "\n");
String expected = "Score = 80.0\n" + "Length of alignment = 4\n"
+ "Sequence FER1_PEA/29-32 (Sequence length = 7)\n"
+ "Sequence Q93XJ9_SOLTU/23-26 (Sequence length = 7)\n\n"
String seqs = ">Q93XJ9_SOLTU/23-29\nL-KAISNV\n>FER1_PEA/26-32\nV-TTTKAF\n";
AlignFrame af = new FileLoader().LoadFileWaitTillLoaded(seqs,
DataSourceType.PASTE);
- AlignViewport viewport = af.getViewport();
+ AlignViewportI viewport = af.getViewport();
PairwiseAlignPanel testee = new PairwiseAlignPanel(viewport);
- String text = ((JTextArea) PA.getValue(testee, "textarea")).getText();
+ String text = ((JTextArea) PA.getValue(testee, "textarea")).getText().replace("\r\n", "\n");
String expected = "Score = 80.0\n" + "Length of alignment = 4\n"
+ "Sequence FER1_PEA/29-32 (Sequence length = 7)\n"
+ "Sequence Q93XJ9_SOLTU/23-26 (Sequence length = 7)\n\n"