@DataProvider(name = "identifyFiles")
public Object[][] IdentifyFileDP()
{
- return new Object[][] {
- { "examples/example.json", FileFormat.Json },
+ return new Object[][] { { "examples/example.json", FileFormat.Json },
{ "examples/plantfdx.fa", FileFormat.Fasta },
{ "examples/dna_interleaved.phy", FileFormat.Phylip },
{ "examples/2GIS.pdb", FileFormat.PDB },
- { "examples/rf00031_folded.stk", FileFormat.Stockholm },
+ { "examples/RF00031_folded.stk", FileFormat.Stockholm },
{ "examples/testdata/test.rnaml", FileFormat.Rnaml },
{ "examples/testdata/test.aln", FileFormat.Clustal },
{ "examples/testdata/test.pfam", FileFormat.Pfam },
{ "examples/testdata/simpleGff3.gff", FileFormat.Features },
{ "examples/testdata/test.jvp", FileFormat.Jalview },
{ "examples/testdata/test.cif", FileFormat.MMCif },
- {
- "examples/testdata/cullpdb_pc25_res3.0_R0.3_d150729_chains9361.fasta.15316",
+ { "examples/testdata/cullpdb_pc25_res3.0_R0.3_d150729_chains9361.fasta.15316",
FileFormat.Fasta },
- { "resources/scoreModel/pam250.scm", FileFormat.ScoreMatrix }
- // { "examples/testdata/test.amsa", "AMSA" },
- // { "examples/test.jnet", "JnetFile" },
+ { "resources/scoreModel/pam250.scm", FileFormat.ScoreMatrix },
+ { "resources/scoreModel/blosum80.scm", FileFormat.ScoreMatrix }
+ // { "examples/testdata/test.amsa", "AMSA" },
+ // { "examples/test.jnet", "JnetFile" },
};
}
// too few columns:
assertFalse(id.looksLikeFeatureData("1 \t 2 \t 3 \t 4 \t 5"));
// GFF format:
- assertTrue(id
- .looksLikeFeatureData("Seq1\tlocal\tHelix\t2456\t2462\tss"));
+ assertTrue(
+ id.looksLikeFeatureData("Seq1\tlocal\tHelix\t2456\t2462\tss"));
// Jalview format:
assertTrue(id.looksLikeFeatureData("Helix\tSeq1\t-1\t2456\t2462\tss"));
// non-numeric start column: