@BeforeClass(alwaysRun = true)
public static void setUpBeforeClass() throws Exception
{
- jalview.bin.Jalview.main(new String[] { "-props",
- "test/jalview/io/testProps.jvprops" });
+ jalview.bin.Jalview
+ .main(new String[]
+ { "-props", "test/jalview/io/testProps.jvprops" });
}
/**
assertTrue("Couldn't set gap character to '.'",
".".equals("" + jalview.bin.Cache.getProperty("GAP_SYMBOL")));
AlignFrame af = new jalview.io.FileLoader().LoadFileWaitTillLoaded(
- "examples/uniref50.fa", FormatAdapter.FILE);
+ "examples/uniref50.fa", DataSourceType.FILE);
assertTrue("Didn't read in the example file correctly.", af != null);
assertTrue("Didn't set the gap character correctly", af.getViewport()
.getAlignment().getSequenceAt(0).getCharAt(5) == '.');
sg.setStartRes(1);
sg.setEndRes(7);
af.getViewport().setSelectionGroup(sg);
- String fseqs = new FormatAdapter(af.alignPanel).formatSequences(
- "FASTA", af.alignPanel, true);
+ String fseqs = new FormatAdapter(af.alignPanel)
+ .formatSequences(FileFormat.Fasta, af.alignPanel, true);
assertTrue("Couldn't find '.' in the exported region\n" + fseqs,
fseqs.indexOf(".") > -1);
}