+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.renderer;
import static org.testng.Assert.assertEquals;
import java.awt.Color;
import org.testng.annotations.Test;
+
public class OverviewRendererTest
{
@Test
public void testGetColumnColourFromSequence()
{
- OverviewResColourFinder cf = new OverviewResColourFinder(false,
- Color.PINK, Color.green); // gapColour, hiddenColour
+ // gapColour, residueColour, hiddenColour
+ OverviewResColourFinder cf = new OverviewResColourFinder(Color.PINK,
+ Color.white, Color.green);
Sequence seq1 = new Sequence("seq1", "PQ-RL-");
Sequence seq2 = new Sequence("seq2", "FVE");
AlignmentI al = new Alignment(new SequenceI[] { seq1, seq2 });
AlignmentViewport av = new AlignViewport(al);
- OverviewDimensions od = new OverviewDimensionsShowHidden(new ViewportRanges(al), false);
+ OverviewDimensions od = new OverviewDimensionsShowHidden(
+ new ViewportRanges(al), false);
ResidueShaderI rs = new ResidueShader(new ZappoColourScheme());
FeatureRenderer fr = new FeatureRenderer(av);
OverviewRenderer or = new OverviewRenderer(fr, od, al, rs, cf);
// P is magenta (see ResidueProperties.zappo)
- assertEquals(or.getColumnColourFromSequence(null, seq1, 0), Color.magenta.getRGB());
+ assertEquals(or.getColumnColourFromSequence(null, seq1, 0),
+ Color.magenta.getRGB());
// Q is green
assertEquals(or.getColumnColourFromSequence(null, seq1, 1),
Color.green.getRGB());