*/
package jalview.urls;
+import jalview.urls.api.UrlProviderI;
+import jalview.urls.desktop.DesktopUrlProviderFactory;
+
import java.io.BufferedWriter;
import java.io.File;
import java.io.FileWriter;
import java.io.IOException;
import java.util.List;
-import java.util.Vector;
import org.testng.Assert;
import org.testng.annotations.BeforeMethod;
public class DesktopUrlProviderFactoryTest
{
- // Test identifiers.org download file
- private static final String testIdOrgString = "[{\"id\":\"MIR:00000002\",\"name\":\"ChEBI\",\"pattern\":\"^CHEBI:\\d+$\","
+ private static final String testIdOrgString = "{\"Local\": [{\"id\":\"MIR:00000002\",\"name\":\"ChEBI\",\"pattern\":\"^CHEBI:\\d+$\","
+ "\"definition\":\"Chemical Entities of Biological Interest (ChEBI)\",\"prefix\":\"chebi\","
+ "\"url\":\"http://identifiers.org/chebi\"},{\"id\":\"MIR:00000005\",\"name\":\"UniProt Knowledgebase\","
+ "\"pattern\":\"^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\.\\d+)?$\","
+ "{\"id\":\"MIR:00000011\",\"name\":\"InterPro\",\"pattern\":\"^IPR\\d{6}$\",\"definition\":\"InterPro\",\"prefix\":\"interpro\","
+ "\"url\":\"http://identifiers.org/interpro\"},"
+ "{\"id\":\"MIR:00000372\",\"name\":\"ENA\",\"pattern\":\"^[A-Z]+[0-9]+(\\.\\d+)?$\",\"definition\":\"The European Nucleotide Archive (ENA),\""
- + "\"prefix\":\"ena.embl\",\"url\":\"http://identifiers.org/ena.embl\"}]";
+ + "\"prefix\":\"ena.embl\",\"url\":\"http://identifiers.org/ena.embl\"}]}";
@BeforeMethod(alwaysRun = true)
public void setup()
bw.close();
} catch (IOException e)
{
- System.out
- .println("Error initialising DesktopUrlProviderFactoryTest test: "
+ System.out.println(
+ "Error initialising DesktopUrlProviderFactoryTest test: "
+ e.getMessage());
}
UrlProviderI prov = factory.createUrlProvider();
// default url correctly set
- Assert.assertEquals(prov.getDefaultUrlId(), "Test1");
- Assert.assertEquals(prov.getDefaultUrl("FER_CAPAN"),
+ Assert.assertEquals(prov.getPrimaryUrlId(), "Test1");
+ Assert.assertEquals(prov.getPrimaryUrl("FER_CAPAN"),
defaultUrl.replace("$SEQUENCE_ID$", "FER_CAPAN"));
- Vector<String> menulinks = prov.getLinksForMenu();
+ List<String> menulinks = prov.getLinksForMenu();
List<UrlLinkDisplay> allLinks = prov.getLinksForTable();
// 8 links in provider - 4 from id file, 4 custom links
// 5 links in menu (cachedUrlList)
Assert.assertEquals(menulinks.size(), 5);
- Assert.assertTrue(menulinks
- .contains("Test1|http://blah.blah/$SEQUENCE_ID$"));
- Assert.assertTrue(menulinks
- .contains("Test2|http://test2/$DB_ACCESSION$"));
- Assert.assertTrue(menulinks
- .contains("Test3|http://test3/$SEQUENCE_ID$"));
- Assert.assertTrue(menulinks
- .contains("UniProt Knowledgebase|http://identifiers.org/uniprot/$DB_ACCESSION$"));
- Assert.assertTrue(menulinks
- .contains("InterPro|http://identifiers.org/interpro/$DB_ACCESSION$"));
+ Assert.assertTrue(
+ menulinks.contains("Test1|http://blah.blah/$SEQUENCE_ID$"));
+ Assert.assertTrue(
+ menulinks.contains("Test2|http://test2/$DB_ACCESSION$"));
+ Assert.assertTrue(
+ menulinks.contains("Test3|http://test3/$SEQUENCE_ID$"));
+ Assert.assertTrue(menulinks.contains(
+ "UniProt Knowledgebase|http://identifiers.org/uniprot/$DB_ACCESSION$|uniprot"));
+ Assert.assertTrue(menulinks.contains(
+ "InterPro|http://identifiers.org/interpro/$DB_ACCESSION$|interpro"));
}
}