Merge branch 'JWS-27-jronn' into develop

[jabaws.git] / testsrc / compbio / data / sequence / FastaReaderTester.java

diff --git a/testsrc/compbio/data/sequence/FastaReaderTester.java b/testsrc/compbio/data/sequence/FastaReaderTester.java
index 77a7fd5..3a3b747 100644 (file)
--- a/testsrc/compbio/data/sequence/FastaReaderTester.java
+++ b/testsrc/compbio/data/sequence/FastaReaderTester.java
@@ -34,6 +34,9 @@ public class FastaReaderTester {
        static FastaSequence s3 = new FastaSequence(" 12 d t y wi               k       jbke    ",\r
                        "  KLSHHDCD" + "   N" + "    H" + "    HSKCTEPHCGNSHQML\n\rHRDP"\r
                                        + "    CCDQCQSWEAENWCASMRKAILF");\r
+       static FastaSequence s4 = new FastaSequence(" 12 d t>y wi->foo          k       jbke    ",\r
+                       "  KLSHHDCD" + "   N" + "    H" + "    HSKCTEPHCGNSHQML\n\rHRDP"\r
+                                       + "    CCDQCQSWEAENWCASMRKAILF");\r
        @Test()\r
        public void test() {\r
 \r
@@ -58,7 +61,7 @@ public class FastaReaderTester {
                }\r
                System.out.println("OLD: " + old_seqs);\r
                System.out.println("NEW: " + list);\r
-               Assert.assertEquals(old_seqs.size() + 1, list.size());\r
+               Assert.assertEquals(old_seqs.size(), list.size());\r
                Assert.assertEquals(old_seqs.get(0), list.get(0));\r
                Assert.assertEquals(old_seqs.get(1), list.get(1));\r
                // Assert.assertEquals(old_seqs.get(2), list.get(2));\r
@@ -68,6 +71,7 @@ public class FastaReaderTester {
                Assert.assertEquals(FastaReaderTester.s1, list.get(1));\r
                Assert.assertEquals(FastaReaderTester.s2, list.get(2));\r
                Assert.assertEquals(FastaReaderTester.s3, list.get(3));\r
+               Assert.assertEquals(FastaReaderTester.s4, list.get(4));\r
 \r
        }\r
 }\r