Further work on AAConWS

[jabaws.git] / webservices / compbio / data / msa / jaxws / CustomAlign.java

diff --git a/webservices/compbio/data/msa/jaxws/CustomAlign.java b/webservices/compbio/data/msa/jaxws/CustomAlign.java
index 92c9bab..d258864 100644 (file)
--- a/webservices/compbio/data/msa/jaxws/CustomAlign.java
+++ b/webservices/compbio/data/msa/jaxws/CustomAlign.java
@@ -7,8 +7,6 @@ import javax.xml.bind.annotation.XmlAccessorType;
 import javax.xml.bind.annotation.XmlElement;\r
 import javax.xml.bind.annotation.XmlRootElement;\r
 import javax.xml.bind.annotation.XmlType;\r
-import compbio.data.sequence.FastaSequence;\r
-import compbio.metadata.Option;\r
 \r
 @XmlRootElement(name = "customAlign", namespace = "http://msa.data.compbio/01/01/2010/")\r
 @XmlAccessorType(XmlAccessType.FIELD)\r
@@ -19,16 +17,16 @@ import compbio.metadata.Option;
 public class CustomAlign {\r
 \r
     @XmlElement(name = "fastaSequences", namespace = "")\r
-    private List<FastaSequence> fastaSequences;\r
+    private List<compbio.data.sequence.FastaSequence> fastaSequences;\r
     @XmlElement(name = "options", namespace = "")\r
-    private List<Option> options;\r
+    private List<compbio.metadata.Option> options;\r
 \r
     /**\r
      * \r
      * @return\r
      *     returns List<FastaSequence>\r
      */\r
-    public List<FastaSequence> getFastaSequences() {\r
+    public List<compbio.data.sequence.FastaSequence> getFastaSequences() {\r
         return this.fastaSequences;\r
     }\r
 \r
@@ -37,7 +35,7 @@ public class CustomAlign {
      * @param fastaSequences\r
      *     the value for the fastaSequences property\r
      */\r
-    public void setFastaSequences(List<FastaSequence> fastaSequences) {\r
+    public void setFastaSequences(List<compbio.data.sequence.FastaSequence> fastaSequences) {\r
         this.fastaSequences = fastaSequences;\r
     }\r
 \r
@@ -46,7 +44,7 @@ public class CustomAlign {
      * @return\r
      *     returns List<Option>\r
      */\r
-    public List<Option> getOptions() {\r
+    public List<compbio.metadata.Option> getOptions() {\r
         return this.options;\r
     }\r
 \r
@@ -55,7 +53,7 @@ public class CustomAlign {
      * @param options\r
      *     the value for the options property\r
      */\r
-    public void setOptions(List<Option> options) {\r
+    public void setOptions(List<compbio.metadata.Option> options) {\r
         this.options = options;\r
     }\r
 \r