import java.io.FileInputStream;\r
import java.io.FileOutputStream;\r
import java.io.IOException;\r
-import java.io.OutputStream;\r
import java.io.PrintWriter;\r
import java.io.Writer;\r
import java.net.ConnectException;\r
import compbio.data.msa.RegistryWS;\r
import compbio.data.msa.SequenceAnnotation;\r
import compbio.data.sequence.Alignment;\r
-import compbio.data.sequence.AlignmentMetadata;\r
import compbio.data.sequence.JpredAlignment;\r
import compbio.data.sequence.FastaSequence;\r
import compbio.data.sequence.ScoreManager;\r
* \r
*/\r
public static void main(String[] args) {\r
-\r
if (args == null) {\r
System.out.println(Constraints.help_text);\r
System.exit(1);\r
System.out.println(Constraints.help_text);\r
System.exit(1);\r
}\r
-\r
try {\r
new Jws2Client(args);\r
} catch (IOException e) {\r