\r
import java.io.File;\r
import java.net.URL;\r
+import java.util.Set;\r
\r
import javax.xml.namespace.QName;\r
import javax.xml.ws.Service;\r
import compbio.runner.conservation.AACon;\r
import compbio.runner.disorder.Disembl;\r
import compbio.runner.disorder.GlobPlot;\r
+import compbio.runner.disorder.IUPred;\r
import compbio.runner.disorder.Jronn;\r
+import compbio.runner.msa.ClustalO;\r
import compbio.runner.msa.ClustalW;\r
import compbio.runner.msa.Mafft;\r
import compbio.runner.msa.Muscle;\r
* \r
*/\r
public enum Services {\r
- MafftWS, MuscleWS, ClustalWS, TcoffeeWS, ProbconsWS, AAConWS, JronnWS, DisemblWS, GlobPlotWS;\r
+ MafftWS, MuscleWS, ClustalWS, ClustalOWS, TcoffeeWS, ProbconsWS, AAConWS, JronnWS, DisemblWS, GlobPlotWS, IUPredWS;\r
\r
public static Services getService(String servName) {\r
servName = servName.trim().toLowerCase();\r
switch (this) {\r
case AAConWS :\r
return AACon.class;\r
+ case ClustalOWS :\r
+ return ClustalO.class;\r
case ClustalWS :\r
return ClustalW.class;\r
case MafftWS :\r
return GlobPlot.class;\r
case JronnWS :\r
return Jronn.class;\r
+ case IUPredWS :\r
+ return IUPred.class;\r
default :\r
throw new RuntimeException(\r
"Unknown web service implementation class for service: "\r
return Service.create(url, qname);\r
}\r
\r
+ public static String toString(Set<Services> services) {\r
+ if (services == null || services.isEmpty()) {\r
+ return "";\r
+ }\r
+ String value = "";\r
+ String delim = ", ";\r
+ for (Services serv : services) {\r
+ value += serv.toString() + delim;\r
+ }\r
+ value = value.substring(0, value.length() - delim.length());\r
+ return value;\r
+ }\r
+\r
Class<? extends JABAService> getServiceType() {\r
switch (this) {\r
// deliberate leaking\r
case JronnWS :\r
case DisemblWS :\r
case GlobPlotWS :\r
-\r
+ case IUPredWS :\r
return SequenceAnnotation.class;\r
\r
// deliberate leaking\r
case ClustalWS :\r
+ case ClustalOWS :\r
case MafftWS :\r
case MuscleWS :\r
case ProbconsWS :\r