Adding registry web service and changes to WStester and JWS2Client code. Bugs in...

[jabaws.git] / webservices / compbio / ws / server / MafftWS.java

diff --git a/webservices/compbio/ws/server/MafftWS.java b/webservices/compbio/ws/server/MafftWS.java
index 83c5758..9b74ce6 100644 (file)
--- a/webservices/compbio/ws/server/MafftWS.java
+++ b/webservices/compbio/ws/server/MafftWS.java
@@ -64,7 +64,7 @@ public class MafftWS implements MsaWS<Mafft> {
        private static final PresetManager<Mafft> mafftPresets = Util\r
                        .getPresets(Mafft.class);\r
 \r
-       private static final LimitsManager<Mafft> limitMan = compbio.runner.Util\r
+       private static final LimitsManager<Mafft> limitMan = compbio.engine.client.Util\r
                        .getLimits(new Mafft().getType());\r
 \r
        @Override\r
@@ -78,7 +78,6 @@ public class MafftWS implements MsaWS<Mafft> {
        ConfiguredExecutable<Mafft> init(List<FastaSequence> dataSet)\r
                        throws JobSubmissionException {\r
                Mafft mafft = new Mafft();\r
-               mafft.setInput("fasta.in").setOutput("fasta.out");\r
                return Configurator.configureExecutable(mafft, dataSet);\r
        }\r
 \r