Adding registry web service and changes to WStester and JWS2Client code. Bugs in...

[jabaws.git] / webservices / compbio / ws / server / MuscleWS.java

diff --git a/webservices/compbio/ws/server/MuscleWS.java b/webservices/compbio/ws/server/MuscleWS.java
index 80f67b2..aea5bc0 100644 (file)
--- a/webservices/compbio/ws/server/MuscleWS.java
+++ b/webservices/compbio/ws/server/MuscleWS.java
@@ -33,6 +33,7 @@ import compbio.data.sequence.FastaSequence;
 import compbio.engine.AsyncExecutor;\r
 import compbio.engine.Configurator;\r
 import compbio.engine.client.ConfiguredExecutable;\r
+import compbio.engine.client.SkeletalExecutable;\r
 import compbio.metadata.ChunkHolder;\r
 import compbio.metadata.JobStatus;\r
 import compbio.metadata.JobSubmissionException;\r
@@ -78,6 +79,9 @@ public class MuscleWS implements MsaWS<Muscle> {
        ConfiguredExecutable<Muscle> init(List<FastaSequence> sequences)\r
                        throws JobSubmissionException {\r
                Muscle muscle = new Muscle();\r
+               muscle.setInput(SkeletalExecutable.INPUT)\r
+                               .setOutput(SkeletalExecutable.OUTPUT)\r
+                               .setError(SkeletalExecutable.ERROR);\r
                return Configurator.configureExecutable(muscle, sequences);\r
        }\r
 \r