Simple datamodel for RNAalifold.exe output and method to convert from

[jabaws.git] / webservices / compbio / ws / server / RNAalifoldWS.java

diff --git a/webservices/compbio/ws/server/RNAalifoldWS.java b/webservices/compbio/ws/server/RNAalifoldWS.java
index 4a1d5a1..83d7c93 100644 (file)
--- a/webservices/compbio/ws/server/RNAalifoldWS.java
+++ b/webservices/compbio/ws/server/RNAalifoldWS.java
@@ -47,6 +47,9 @@ public class RNAalifoldWS implements JABAService, JManagement, Metadata<RNAalifo
        private static final LimitsManager<RNAalifold> limitMan = compbio.engine.client.Util
                        .getLimits(new RNAalifold().getType());
        
+       //public String fold()
+       
+       
        ConfiguredExecutable<RNAalifold> init() throws JobSubmissionException {
                RNAalifold rnaalifold = new RNAalifold();
                rnaalifold.setInput(SkeletalExecutable.INPUT)
@@ -115,12 +118,12 @@ public class RNAalifoldWS implements JABAService, JManagement, Metadata<RNAalifo
        // PlaceHolder 
        public ChunkHolder pullExecStatistics(String jobId, long position) {
 
-               WSUtil.validateJobId(jobId);
+//             WSUtil.validateJobId(jobId);
 //             String file = Configurator.getWorkDirectory(jobId) + File.separator
 //                             + RNAalifold.getStatFile();
 //             ChunkHolder cholder = WSUtil.pullFile(file, position);
 //             return cholder;
-               return null;
+               return new ChunkHolder("", -1);
        }
 }