AAConWS is working

[jabaws.git] / webservices / compbio / ws / server / TcoffeeWS.java

diff --git a/webservices/compbio/ws/server/TcoffeeWS.java b/webservices/compbio/ws/server/TcoffeeWS.java
index afe2cae..07a1f41 100644 (file)
--- a/webservices/compbio/ws/server/TcoffeeWS.java
+++ b/webservices/compbio/ws/server/TcoffeeWS.java
@@ -34,6 +34,7 @@ import compbio.engine.AsyncExecutor;
 import compbio.engine.Configurator;\r
 import compbio.engine.client.ConfiguredExecutable;\r
 import compbio.engine.client.Executable;\r
+import compbio.engine.client.SkeletalExecutable;\r
 import compbio.metadata.ChunkHolder;\r
 import compbio.metadata.JobStatus;\r
 import compbio.metadata.JobSubmissionException;\r
@@ -75,18 +76,18 @@ public class TcoffeeWS implements MsaWS<Tcoffee> {
     }\r
 \r
     ConfiguredExecutable<Tcoffee> init(List<FastaSequence> sequences)\r
-           throws JobSubmissionException {\r
-       Tcoffee tcoffee = new Tcoffee();\r
-       tcoffee.setInput("fasta.in").setOutput("fasta.out");\r
-       ConfiguredExecutable<Tcoffee> confCoffee = Configurator\r
-               .configureExecutable(tcoffee, sequences);\r
-       if (confCoffee.getExecProvider() == Executable.ExecProvider.Cluster) {\r
-           int clusterCpuNum = Tcoffee.getClusterCpuNum();\r
-           if (clusterCpuNum != 0) {\r
-               tcoffee.setNCore(clusterCpuNum);\r
-           }\r
-       }\r
-       return confCoffee;\r
+    throws JobSubmissionException {\r
+       Tcoffee tcoffee = new Tcoffee();\r
+       tcoffee.setInput("fasta.in").setOutput("fasta.out");\r
+       ConfiguredExecutable<Tcoffee> confCoffee = Configurator\r
+       .configureExecutable(tcoffee, sequences);\r
+       if (confCoffee.getExecProvider() == Executable.ExecProvider.Cluster) {\r
+               int clusterCpuNum = SkeletalExecutable.getClusterCpuNum(Tcoffee.class);\r
+               if (clusterCpuNum != 0) {\r
+                       tcoffee.setNCore(clusterCpuNum);\r
+               }\r
+       }\r
+       return confCoffee;\r
     }\r
 \r
     @Override\r