Adding registry web service and changes to WStester and JWS2Client code. Bugs in...

[jabaws.git] / webservices / compbio / ws / server / TcoffeeWS.java

diff --git a/webservices/compbio/ws/server/TcoffeeWS.java b/webservices/compbio/ws/server/TcoffeeWS.java
index 74c1723..feb35f0 100644 (file)
--- a/webservices/compbio/ws/server/TcoffeeWS.java
+++ b/webservices/compbio/ws/server/TcoffeeWS.java
@@ -66,7 +66,7 @@ public class TcoffeeWS implements MsaWS<Tcoffee> {
        private static final PresetManager<Tcoffee> tcoffeePresets = Util\r
                        .getPresets(Tcoffee.class);\r
 \r
-       private static final LimitsManager<Tcoffee> limitMan = compbio.runner.Util\r
+       private static final LimitsManager<Tcoffee> limitMan = compbio.engine.client.Util\r
                        .getLimits(new Tcoffee().getType());\r
 \r
        @Override\r
@@ -81,7 +81,6 @@ public class TcoffeeWS implements MsaWS<Tcoffee> {
        ConfiguredExecutable<Tcoffee> init(List<FastaSequence> sequences)\r
                        throws JobSubmissionException {\r
                Tcoffee tcoffee = new Tcoffee();\r
-               tcoffee.setInput("fasta.in").setOutput("fasta.out");\r
                ConfiguredExecutable<Tcoffee> confCoffee = Configurator\r
                                .configureExecutable(tcoffee, sequences);\r
                if (confCoffee.getExecProvider() == Executable.ExecProvider.Cluster) {\r