<xs:element name="customAnalizeResponse" type="tns:customAnalizeResponse"/>
- <xs:element name="getConservation" type="tns:getConservation"/>
+ <xs:element name="getAnnotation" type="tns:getAnnotation"/>
- <xs:element name="getConservationResponse" type="tns:getConservationResponse"/>
+ <xs:element name="getAnnotationResponse" type="tns:getAnnotationResponse"/>
<xs:element name="getJobStatus" type="tns:getJobStatus"/>
<xs:element name="getRunnerOptionsResponse" type="tns:getRunnerOptionsResponse"/>
+ <xs:element name="limits" type="tns:limitsManager"/>
+
<xs:element name="presetAnalize" type="tns:presetAnalize"/>
<xs:element name="presetAnalizeResponse" type="tns:presetAnalizeResponse"/>
+ <xs:element name="presets" type="tns:presetManager"/>
+
<xs:element name="pullExecStatistics" type="tns:pullExecStatistics"/>
<xs:element name="pullExecStatisticsResponse" type="tns:pullExecStatisticsResponse"/>
- <xs:complexType name="getJobStatus">
+ <xs:element name="runnerConfig" type="tns:runnerConfig"/>
+
+ <xs:complexType name="getRunnerOptions">
+ <xs:sequence/>
+ </xs:complexType>
+
+ <xs:complexType name="getRunnerOptionsResponse">
<xs:sequence>
- <xs:element name="jobId" type="xs:string" minOccurs="0"/>
+ <xs:element name="return" type="tns:runnerConfig" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="getJobStatusResponse">
+ <xs:complexType name="runnerConfig">
<xs:sequence>
- <xs:element name="return" type="tns:jobStatus" minOccurs="0"/>
+ <xs:element name="options" type="tns:option" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
+ <xs:element name="parameters" type="tns:parameter" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
+ <xs:element name="prmSeparator" type="xs:string" minOccurs="0"/>
+ <xs:element name="runnerClassName" type="xs:string"/>
+ </xs:sequence>
+ </xs:complexType>
+
+ <xs:complexType name="option">
+ <xs:sequence>
+ <xs:element name="description" type="xs:string"/>
+ <xs:element name="optionNames" type="xs:string" maxOccurs="unbounded"/>
+ <xs:element name="name" type="xs:string"/>
+ <xs:element name="furtherDetails" type="xs:anyURI" minOccurs="0"/>
+ <xs:element name="defaultValue" type="xs:string" minOccurs="0"/>
+ </xs:sequence>
+ <xs:attribute name="isRequired" type="xs:boolean" use="required"/>
+ </xs:complexType>
+
+ <xs:complexType name="parameter">
+ <xs:complexContent>
+ <xs:extension base="tns:option">
+ <xs:sequence>
+ <xs:element name="possibleValues" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
+ <xs:element name="validValue" type="tns:valueConstrain" minOccurs="0"/>
+ </xs:sequence>
+ </xs:extension>
+ </xs:complexContent>
+ </xs:complexType>
+
+ <xs:complexType name="valueConstrain">
+ <xs:sequence>
+ <xs:element name="type" type="tns:type"/>
+ <xs:element name="max" type="xs:string" minOccurs="0"/>
+ <xs:element name="min" type="xs:string" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
</xs:complexType>
<xs:complexType name="fastaSequence">
- <xs:sequence/>
+ <xs:sequence>
+ <xs:element name="id" type="xs:string" minOccurs="0"/>
+ <xs:element name="sequence" type="xs:string" minOccurs="0"/>
+ </xs:sequence>
</xs:complexType>
<xs:complexType name="analizeResponse">
</xs:sequence>
</xs:complexType>
- <xs:complexType name="getRunnerOptions">
- <xs:sequence/>
- </xs:complexType>
-
- <xs:complexType name="getRunnerOptionsResponse">
- <xs:sequence>
- <xs:element name="return" type="tns:runnerConfig" minOccurs="0"/>
- </xs:sequence>
- </xs:complexType>
-
- <xs:complexType name="runnerConfig">
- <xs:sequence>
- <xs:element name="options" type="tns:option" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
- <xs:element name="parameters" type="tns:parameter" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
- <xs:element name="prmSeparator" type="xs:string" minOccurs="0"/>
- <xs:element name="runnerClassName" type="xs:string" minOccurs="0"/>
- </xs:sequence>
- </xs:complexType>
-
- <xs:complexType name="option">
+ <xs:complexType name="getJobStatus">
<xs:sequence>
- <xs:element name="defaultValue" type="xs:string" minOccurs="0"/>
- <xs:element name="description" type="xs:string" minOccurs="0"/>
- <xs:element name="furtherDetails" type="xs:anyURI" minOccurs="0"/>
- <xs:element name="name" type="xs:string" minOccurs="0"/>
- <xs:element name="required" type="xs:boolean"/>
+ <xs:element name="jobId" type="xs:string" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="parameter">
- <xs:complexContent>
- <xs:extension base="tns:option">
- <xs:sequence>
- <xs:element name="optionName" type="xs:string" minOccurs="0"/>
- <xs:element name="validValue" type="tns:valueConstrain" minOccurs="0"/>
- </xs:sequence>
- </xs:extension>
- </xs:complexContent>
- </xs:complexType>
-
- <xs:complexType name="valueConstrain">
+ <xs:complexType name="getJobStatusResponse">
<xs:sequence>
- <xs:element name="type" type="tns:type" minOccurs="0"/>
+ <xs:element name="return" type="tns:jobStatus" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
<xs:complexType name="preset">
<xs:sequence>
+ <xs:element name="name" type="xs:string"/>
<xs:element name="description" type="xs:string" minOccurs="0"/>
- <xs:element name="name" type="xs:string" minOccurs="0"/>
- <xs:element name="options" type="xs:string" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
+ <xs:element name="optlist" minOccurs="0">
+ <xs:complexType>
+ <xs:sequence>
+ <xs:element name="option" type="xs:string" maxOccurs="unbounded"/>
+ </xs:sequence>
+ </xs:complexType>
+ </xs:element>
</xs:sequence>
</xs:complexType>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="getLimits">
- <xs:sequence/>
+ <xs:complexType name="getAnnotation">
+ <xs:sequence>
+ <xs:element name="jobId" type="xs:string" minOccurs="0"/>
+ </xs:sequence>
</xs:complexType>
- <xs:complexType name="getLimitsResponse">
+ <xs:complexType name="getAnnotationResponse">
<xs:sequence>
- <xs:element name="return" type="tns:limitsManager" minOccurs="0"/>
+ <xs:element name="return" type="tns:scoreManager" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="limitsManager">
- <xs:sequence/>
+ <xs:complexType name="scoreManager">
+ <xs:sequence>
+ <xs:element name="seqScores" type="tns:scoreHolder" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
+ </xs:sequence>
</xs:complexType>
- <xs:complexType name="getLimit">
+ <xs:complexType name="scoreHolder">
<xs:sequence>
- <xs:element name="presetName" type="xs:string" minOccurs="0"/>
+ <xs:element name="id" type="xs:string" minOccurs="0"/>
+ <xs:element name="scores" type="tns:score" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="getLimitResponse">
+ <xs:complexType name="score">
<xs:sequence>
- <xs:element name="return" type="tns:limit" minOccurs="0"/>
+ <xs:element name="method" type="xs:string" minOccurs="0"/>
+ <xs:element name="ranges" type="tns:range" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
+ <xs:element name="scores" type="xs:float" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="limit">
- <xs:sequence/>
+ <xs:complexType name="range">
+ <xs:sequence>
+ <xs:element name="from" type="xs:int"/>
+ <xs:element name="to" type="xs:int"/>
+ </xs:sequence>
</xs:complexType>
- <xs:complexType name="getPresets">
- <xs:sequence/>
+ <xs:complexType name="ResultNotAvailableException">
+ <xs:sequence>
+ <xs:element name="message" type="xs:string" minOccurs="0"/>
+ </xs:sequence>
</xs:complexType>
- <xs:complexType name="getPresetsResponse">
+ <xs:complexType name="customAnalize">
<xs:sequence>
- <xs:element name="return" type="tns:presetManager" minOccurs="0"/>
+ <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
+ <xs:element name="options" type="tns:option" minOccurs="0" maxOccurs="unbounded"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="presetManager">
+ <xs:complexType name="customAnalizeResponse">
<xs:sequence>
- <xs:element name="presets" type="tns:preset" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
- <xs:element name="runnerClassName" type="xs:string" minOccurs="0"/>
+ <xs:element name="return" type="xs:string" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="cancelJob">
+ <xs:complexType name="getLimit">
<xs:sequence>
- <xs:element name="jobId" type="xs:string" minOccurs="0"/>
+ <xs:element name="presetName" type="xs:string" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="cancelJobResponse">
+ <xs:complexType name="getLimitResponse">
<xs:sequence>
- <xs:element name="return" type="xs:boolean"/>
+ <xs:element name="return" type="tns:limit" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="customAnalize">
+ <xs:complexType name="limit">
<xs:sequence>
- <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
- <xs:element name="options" type="tns:option" minOccurs="0" maxOccurs="unbounded"/>
+ <xs:element name="preset" type="xs:string" minOccurs="0"/>
+ <xs:element name="seqNumber" type="xs:int"/>
+ <xs:element name="seqLength" type="xs:int"/>
</xs:sequence>
+ <xs:attribute name="isDefault" type="xs:boolean" use="required"/>
</xs:complexType>
- <xs:complexType name="customAnalizeResponse">
+ <xs:complexType name="getLimits">
+ <xs:sequence/>
+ </xs:complexType>
+
+ <xs:complexType name="getLimitsResponse">
<xs:sequence>
- <xs:element name="return" type="xs:string" minOccurs="0"/>
+ <xs:element name="return" type="tns:limitsManager" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="getConservation">
+ <xs:complexType name="limitsManager">
<xs:sequence>
- <xs:element name="jobId" type="xs:string" minOccurs="0"/>
+ <xs:element name="runnerClassName" type="xs:string" minOccurs="0"/>
+ <xs:element name="limit" type="tns:limit" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="getConservationResponse">
+ <xs:complexType name="getPresets">
+ <xs:sequence/>
+ </xs:complexType>
+
+ <xs:complexType name="getPresetsResponse">
<xs:sequence>
- <xs:element name="return" type="tns:score" minOccurs="0" maxOccurs="unbounded"/>
+ <xs:element name="return" type="tns:presetManager" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="score">
+ <xs:complexType name="presetManager">
<xs:sequence>
- <xs:element name="method" type="tns:method" minOccurs="0"/>
- <xs:element name="scores" type="xs:float" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
+ <xs:element name="runnerClassName" type="xs:string"/>
+ <xs:element name="preset" type="tns:preset" maxOccurs="unbounded"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="ResultNotAvailableException">
+ <xs:complexType name="cancelJob">
<xs:sequence>
- <xs:element name="message" type="xs:string" minOccurs="0"/>
+ <xs:element name="jobId" type="xs:string" minOccurs="0"/>
+ </xs:sequence>
+ </xs:complexType>
+
+ <xs:complexType name="cancelJobResponse">
+ <xs:sequence>
+ <xs:element name="return" type="xs:boolean"/>
</xs:sequence>
</xs:complexType>
</xs:complexType>
<xs:complexType name="chunkHolder">
- <xs:sequence/>
+ <xs:sequence>
+ <xs:element name="chunk" type="xs:string" minOccurs="0"/>
+ <xs:element name="position" type="xs:long"/>
+ </xs:sequence>
</xs:complexType>
+ <xs:simpleType name="type">
+ <xs:restriction base="xs:string">
+ <xs:enumeration value="Integer"/>
+ <xs:enumeration value="Float"/>
+ </xs:restriction>
+ </xs:simpleType>
+
<xs:simpleType name="jobStatus">
<xs:restriction base="xs:string">
<xs:enumeration value="PENDING"/>
<xs:enumeration value="COLLECTED"/>
</xs:restriction>
</xs:simpleType>
-
- <xs:simpleType name="type">
- <xs:restriction base="xs:string">
- <xs:enumeration value="Integer"/>
- <xs:enumeration value="Float"/>
- </xs:restriction>
- </xs:simpleType>
-
- <xs:simpleType name="method">
- <xs:restriction base="xs:string">
- <xs:enumeration value="KABAT"/>
- <xs:enumeration value="JORES"/>
- <xs:enumeration value="SCHNEIDER"/>
- <xs:enumeration value="SHENKIN"/>
- <xs:enumeration value="GERSTEIN"/>
- <xs:enumeration value="TAYLOR_GAPS"/>
- <xs:enumeration value="TAYLOR_NO_GAPS"/>
- <xs:enumeration value="ZVELIBIL"/>
- <xs:enumeration value="KARLIN"/>
- <xs:enumeration value="ARMON"/>
- <xs:enumeration value="THOMPSON"/>
- <xs:enumeration value="NOT_LANCET"/>
- <xs:enumeration value="MIRNY"/>
- <xs:enumeration value="WILLIAMSON"/>
- <xs:enumeration value="LANDGRAF"/>
- <xs:enumeration value="SANDER"/>
- <xs:enumeration value="VALDAR"/>
- <xs:enumeration value="SMERFS"/>
- </xs:restriction>
- </xs:simpleType>
</xs:schema>