<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
-<xs:schema version="1.0" targetNamespace="http://msa.data.compbio/01/12/2010/" xmlns:tns="http://msa.data.compbio/01/12/2010/" xmlns:xs="http://www.w3.org/2001/XMLSchema">
+<xs:schema version="1.0" targetNamespace="http://msa.data.compbio/01/01/2010/" xmlns:tns="http://msa.data.compbio/01/01/2010/" xmlns:xs="http://www.w3.org/2001/XMLSchema">
<xs:element name="JobSubmissionException" type="tns:JobSubmissionException"/>
<xs:element name="WrongParameterException" type="tns:WrongParameterException"/>
- <xs:element name="analize" type="tns:analize"/>
+ <xs:element name="align" type="tns:align"/>
- <xs:element name="analizeResponse" type="tns:analizeResponse"/>
+ <xs:element name="alignResponse" type="tns:alignResponse"/>
<xs:element name="cancelJob" type="tns:cancelJob"/>
<xs:element name="cancelJobResponse" type="tns:cancelJobResponse"/>
- <xs:element name="customAnalize" type="tns:customAnalize"/>
+ <xs:element name="customAlign" type="tns:customAlign"/>
- <xs:element name="customAnalizeResponse" type="tns:customAnalizeResponse"/>
-
- <xs:element name="getAnnotation" type="tns:getAnnotation"/>
-
- <xs:element name="getAnnotationResponse" type="tns:getAnnotationResponse"/>
+ <xs:element name="customAlignResponse" type="tns:customAlignResponse"/>
<xs:element name="getJobStatus" type="tns:getJobStatus"/>
<xs:element name="getPresetsResponse" type="tns:getPresetsResponse"/>
+ <xs:element name="getResult" type="tns:getResult"/>
+
+ <xs:element name="getResultResponse" type="tns:getResultResponse"/>
+
<xs:element name="getRunnerOptions" type="tns:getRunnerOptions"/>
<xs:element name="getRunnerOptionsResponse" type="tns:getRunnerOptionsResponse"/>
<xs:element name="limits" type="tns:limitsManager"/>
- <xs:element name="presetAnalize" type="tns:presetAnalize"/>
+ <xs:element name="presetAlign" type="tns:presetAlign"/>
- <xs:element name="presetAnalizeResponse" type="tns:presetAnalizeResponse"/>
+ <xs:element name="presetAlignResponse" type="tns:presetAlignResponse"/>
<xs:element name="presets" type="tns:presetManager"/>
<xs:element name="runnerConfig" type="tns:runnerConfig"/>
- <xs:complexType name="customAnalize">
+ <xs:complexType name="align">
<xs:sequence>
<xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
- <xs:element name="options" type="tns:option" minOccurs="0" maxOccurs="unbounded"/>
</xs:sequence>
</xs:complexType>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="option">
- <xs:sequence>
- <xs:element name="description" type="xs:string"/>
- <xs:element name="optionNames" type="xs:string" maxOccurs="unbounded"/>
- <xs:element name="name" type="xs:string"/>
- <xs:element name="furtherDetails" type="xs:anyURI" minOccurs="0"/>
- <xs:element name="defaultValue" type="xs:string" minOccurs="0"/>
- </xs:sequence>
- <xs:attribute name="isRequired" type="xs:boolean" use="required"/>
- </xs:complexType>
-
- <xs:complexType name="customAnalizeResponse">
+ <xs:complexType name="alignResponse">
<xs:sequence>
<xs:element name="return" type="xs:string" minOccurs="0"/>
</xs:sequence>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="WrongParameterException">
+ <xs:complexType name="customAlign">
<xs:sequence>
- <xs:element name="message" type="xs:string" minOccurs="0"/>
+ <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
+ <xs:element name="options" type="tns:option" minOccurs="0" maxOccurs="unbounded"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="getRunnerOptions">
- <xs:sequence/>
- </xs:complexType>
-
- <xs:complexType name="getRunnerOptionsResponse">
+ <xs:complexType name="option">
<xs:sequence>
- <xs:element name="return" type="tns:runnerConfig" minOccurs="0"/>
+ <xs:element name="description" type="xs:string"/>
+ <xs:element name="optionNames" type="xs:string" maxOccurs="unbounded"/>
+ <xs:element name="name" type="xs:string"/>
+ <xs:element name="furtherDetails" type="xs:anyURI" minOccurs="0"/>
+ <xs:element name="defaultValue" type="xs:string" minOccurs="0"/>
</xs:sequence>
+ <xs:attribute name="isRequired" type="xs:boolean" use="required"/>
</xs:complexType>
- <xs:complexType name="runnerConfig">
+ <xs:complexType name="customAlignResponse">
<xs:sequence>
- <xs:element name="options" type="tns:option" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
- <xs:element name="parameters" type="tns:parameter" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
- <xs:element name="prmSeparator" type="xs:string" minOccurs="0"/>
- <xs:element name="runnerClassName" type="xs:string"/>
+ <xs:element name="return" type="xs:string" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="parameter">
- <xs:complexContent>
- <xs:extension base="tns:option">
- <xs:sequence>
- <xs:element name="possibleValues" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
- <xs:element name="validValue" type="tns:valueConstrain" minOccurs="0"/>
- </xs:sequence>
- </xs:extension>
- </xs:complexContent>
- </xs:complexType>
-
- <xs:complexType name="valueConstrain">
+ <xs:complexType name="WrongParameterException">
<xs:sequence>
- <xs:element name="type" type="tns:type"/>
- <xs:element name="max" type="xs:string" minOccurs="0"/>
- <xs:element name="min" type="xs:string" minOccurs="0"/>
+ <xs:element name="message" type="xs:string" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="getJobStatus">
- <xs:sequence>
- <xs:element name="jobId" type="xs:string" minOccurs="0"/>
- </xs:sequence>
- </xs:complexType>
-
- <xs:complexType name="getJobStatusResponse">
- <xs:sequence>
- <xs:element name="return" type="tns:jobStatus" minOccurs="0"/>
- </xs:sequence>
- </xs:complexType>
-
- <xs:complexType name="presetAnalize">
+ <xs:complexType name="presetAlign">
<xs:sequence>
<xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="preset" type="tns:preset" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="presetAnalizeResponse">
+ <xs:complexType name="presetAlignResponse">
<xs:sequence>
<xs:element name="return" type="xs:string" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="getAnnotation">
+ <xs:complexType name="getLimit">
<xs:sequence>
- <xs:element name="jobId" type="xs:string" minOccurs="0"/>
+ <xs:element name="presetName" type="xs:string" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="getAnnotationResponse">
+ <xs:complexType name="getLimitResponse">
<xs:sequence>
- <xs:element name="return" type="tns:scoreManager" minOccurs="0"/>
+ <xs:element name="return" type="tns:limit" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="scoreManager">
+ <xs:complexType name="limit">
<xs:sequence>
- <xs:element name="seqScores" type="tns:scoreHolder" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
+ <xs:element name="preset" type="xs:string" minOccurs="0"/>
+ <xs:element name="seqNumber" type="xs:int"/>
+ <xs:element name="seqLength" type="xs:int"/>
</xs:sequence>
+ <xs:attribute name="isDefault" type="xs:boolean" use="required"/>
+ </xs:complexType>
+
+ <xs:complexType name="getLimits">
+ <xs:sequence/>
</xs:complexType>
- <xs:complexType name="scoreHolder">
+ <xs:complexType name="getLimitsResponse">
<xs:sequence>
- <xs:element name="id" type="xs:string" minOccurs="0"/>
- <xs:element name="scores" type="tns:score" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
+ <xs:element name="return" type="tns:limitsManager" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="score">
+ <xs:complexType name="limitsManager">
<xs:sequence>
- <xs:element name="method" type="xs:string" minOccurs="0"/>
- <xs:element name="ranges" type="tns:range" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
- <xs:element name="scores" type="xs:float" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
+ <xs:element name="runnerClassName" type="xs:string" minOccurs="0"/>
+ <xs:element name="limit" type="tns:limit" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="range">
+ <xs:complexType name="getPresets">
+ <xs:sequence/>
+ </xs:complexType>
+
+ <xs:complexType name="getPresetsResponse">
<xs:sequence>
- <xs:element name="from" type="xs:int"/>
- <xs:element name="to" type="xs:int"/>
+ <xs:element name="return" type="tns:presetManager" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="ResultNotAvailableException">
+ <xs:complexType name="presetManager">
<xs:sequence>
- <xs:element name="message" type="xs:string" minOccurs="0"/>
+ <xs:element name="runnerClassName" type="xs:string"/>
+ <xs:element name="preset" type="tns:preset" maxOccurs="unbounded"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="getLimits">
- <xs:sequence/>
+ <xs:complexType name="cancelJob">
+ <xs:sequence>
+ <xs:element name="jobId" type="xs:string" minOccurs="0"/>
+ </xs:sequence>
</xs:complexType>
- <xs:complexType name="getLimitsResponse">
+ <xs:complexType name="cancelJobResponse">
<xs:sequence>
- <xs:element name="return" type="tns:limitsManager" minOccurs="0"/>
+ <xs:element name="return" type="xs:boolean"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="limitsManager">
+ <xs:complexType name="getRunnerOptions">
+ <xs:sequence/>
+ </xs:complexType>
+
+ <xs:complexType name="getRunnerOptionsResponse">
<xs:sequence>
- <xs:element name="runnerClassName" type="xs:string" minOccurs="0"/>
- <xs:element name="limit" type="tns:limit" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
+ <xs:element name="return" type="tns:runnerConfig" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="limit">
+ <xs:complexType name="runnerConfig">
<xs:sequence>
- <xs:element name="preset" type="xs:string" minOccurs="0"/>
- <xs:element name="seqNumber" type="xs:int"/>
- <xs:element name="seqLength" type="xs:int"/>
+ <xs:element name="options" type="tns:option" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
+ <xs:element name="parameters" type="tns:parameter" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
+ <xs:element name="prmSeparator" type="xs:string" minOccurs="0"/>
+ <xs:element name="runnerClassName" type="xs:string"/>
</xs:sequence>
- <xs:attribute name="isDefault" type="xs:boolean" use="required"/>
</xs:complexType>
- <xs:complexType name="getPresets">
- <xs:sequence/>
+ <xs:complexType name="parameter">
+ <xs:complexContent>
+ <xs:extension base="tns:option">
+ <xs:sequence>
+ <xs:element name="possibleValues" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
+ <xs:element name="validValue" type="tns:valueConstrain" minOccurs="0"/>
+ </xs:sequence>
+ </xs:extension>
+ </xs:complexContent>
</xs:complexType>
- <xs:complexType name="getPresetsResponse">
+ <xs:complexType name="valueConstrain">
<xs:sequence>
- <xs:element name="return" type="tns:presetManager" minOccurs="0"/>
+ <xs:element name="type" type="tns:type"/>
+ <xs:element name="max" type="xs:string" minOccurs="0"/>
+ <xs:element name="min" type="xs:string" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="presetManager">
+ <xs:complexType name="getResult">
<xs:sequence>
- <xs:element name="runnerClassName" type="xs:string"/>
- <xs:element name="preset" type="tns:preset" maxOccurs="unbounded"/>
+ <xs:element name="jobId" type="xs:string" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="getLimit">
+ <xs:complexType name="getResultResponse">
<xs:sequence>
- <xs:element name="presetName" type="xs:string" minOccurs="0"/>
+ <xs:element name="return" type="tns:alignment" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="getLimitResponse">
+ <xs:complexType name="alignment">
<xs:sequence>
- <xs:element name="return" type="tns:limit" minOccurs="0"/>
+ <xs:element name="metadata" type="tns:alignmentMetadata" minOccurs="0"/>
+ <xs:element name="sequences" type="tns:fastaSequence" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="cancelJob">
+ <xs:complexType name="alignmentMetadata">
<xs:sequence>
- <xs:element name="jobId" type="xs:string" minOccurs="0"/>
+ <xs:element name="program" type="tns:program" minOccurs="0"/>
+ <xs:element name="gapchar" type="xs:unsignedShort"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="cancelJobResponse">
+ <xs:complexType name="ResultNotAvailableException">
<xs:sequence>
- <xs:element name="return" type="xs:boolean"/>
+ <xs:element name="message" type="xs:string" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="analize">
+ <xs:complexType name="getJobStatus">
<xs:sequence>
- <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
+ <xs:element name="jobId" type="xs:string" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="analizeResponse">
+ <xs:complexType name="getJobStatusResponse">
<xs:sequence>
- <xs:element name="return" type="xs:string" minOccurs="0"/>
+ <xs:element name="return" type="tns:jobStatus" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
</xs:restriction>
</xs:simpleType>
+ <xs:simpleType name="program">
+ <xs:restriction base="xs:string">
+ <xs:enumeration value="CLUSTAL"/>
+ <xs:enumeration value="MAFFT"/>
+ <xs:enumeration value="MUSCLE"/>
+ <xs:enumeration value="Tcoffee"/>
+ <xs:enumeration value="Probcons"/>
+ <xs:enumeration value="Jpred"/>
+ </xs:restriction>
+ </xs:simpleType>
+
<xs:simpleType name="jobStatus">
<xs:restriction base="xs:string">
<xs:enumeration value="PENDING"/>