<xs:element name="getRunnerOptionsResponse" type="tns:getRunnerOptionsResponse"/>
+ <xs:element name="limits" type="tns:limitsManager"/>
+
<xs:element name="presetAlign" type="tns:presetAlign"/>
<xs:element name="presetAlignResponse" type="tns:presetAlignResponse"/>
+ <xs:element name="presets" type="tns:presetManager"/>
+
<xs:element name="pullExecStatistics" type="tns:pullExecStatistics"/>
<xs:element name="pullExecStatisticsResponse" type="tns:pullExecStatisticsResponse"/>
+ <xs:element name="runnerConfig" type="tns:runnerConfig"/>
+
<xs:complexType name="pullExecStatistics">
<xs:sequence>
<xs:element name="jobId" type="xs:string" minOccurs="0"/>
</xs:complexType>
<xs:complexType name="chunkHolder">
- <xs:sequence/>
+ <xs:sequence>
+ <xs:element name="chunk" type="xs:string" minOccurs="0"/>
+ <xs:element name="position" type="xs:long"/>
+ </xs:sequence>
</xs:complexType>
<xs:complexType name="align">
</xs:complexType>
<xs:complexType name="fastaSequence">
- <xs:sequence/>
+ <xs:sequence>
+ <xs:element name="id" type="xs:string" minOccurs="0"/>
+ <xs:element name="sequence" type="xs:string" minOccurs="0"/>
+ </xs:sequence>
</xs:complexType>
<xs:complexType name="alignResponse">
<xs:complexType name="option">
<xs:sequence>
- <xs:element name="defaultValue" type="xs:string" minOccurs="0"/>
- <xs:element name="description" type="xs:string" minOccurs="0"/>
+ <xs:element name="description" type="xs:string"/>
+ <xs:element name="optionNames" type="xs:string" maxOccurs="unbounded"/>
+ <xs:element name="name" type="xs:string"/>
<xs:element name="furtherDetails" type="xs:anyURI" minOccurs="0"/>
- <xs:element name="name" type="xs:string" minOccurs="0"/>
- <xs:element name="required" type="xs:boolean"/>
+ <xs:element name="defaultValue" type="xs:string" minOccurs="0"/>
</xs:sequence>
+ <xs:attribute name="isRequired" type="xs:boolean" use="required"/>
</xs:complexType>
<xs:complexType name="customAlignResponse">
</xs:sequence>
</xs:complexType>
- <xs:complexType name="getLimits">
- <xs:sequence/>
+ <xs:complexType name="getLimit">
+ <xs:sequence>
+ <xs:element name="presetName" type="xs:string" minOccurs="0"/>
+ </xs:sequence>
</xs:complexType>
- <xs:complexType name="getLimitsResponse">
+ <xs:complexType name="getLimitResponse">
<xs:sequence>
- <xs:element name="return" type="tns:limitsManager" minOccurs="0"/>
+ <xs:element name="return" type="tns:limit" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="limitsManager">
+ <xs:complexType name="limit">
+ <xs:sequence>
+ <xs:element name="preset" type="xs:string" minOccurs="0"/>
+ <xs:element name="seqNumber" type="xs:int"/>
+ <xs:element name="seqLength" type="xs:int"/>
+ </xs:sequence>
+ <xs:attribute name="isDefault" type="xs:boolean" use="required"/>
+ </xs:complexType>
+
+ <xs:complexType name="getLimits">
<xs:sequence/>
</xs:complexType>
- <xs:complexType name="getLimit">
+ <xs:complexType name="getLimitsResponse">
<xs:sequence>
- <xs:element name="presetName" type="xs:string" minOccurs="0"/>
+ <xs:element name="return" type="tns:limitsManager" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="getLimitResponse">
+ <xs:complexType name="limitsManager">
<xs:sequence>
- <xs:element name="return" type="tns:limit" minOccurs="0"/>
+ <xs:element name="runnerClassName" type="xs:string" minOccurs="0"/>
+ <xs:element name="limit" type="tns:limit" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="limit">
- <xs:sequence/>
- </xs:complexType>
-
<xs:complexType name="getPresets">
<xs:sequence/>
</xs:complexType>
<xs:complexType name="presetManager">
<xs:sequence>
- <xs:element name="presets" type="tns:preset" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
- <xs:element name="runnerClassName" type="xs:string" minOccurs="0"/>
+ <xs:element name="runnerClassName" type="xs:string"/>
+ <xs:element name="preset" type="tns:preset" maxOccurs="unbounded"/>
</xs:sequence>
</xs:complexType>
<xs:complexType name="preset">
<xs:sequence>
+ <xs:element name="name" type="xs:string"/>
<xs:element name="description" type="xs:string" minOccurs="0"/>
- <xs:element name="name" type="xs:string" minOccurs="0"/>
- <xs:element name="options" type="xs:string" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
+ <xs:element name="optlist" minOccurs="0">
+ <xs:complexType>
+ <xs:sequence>
+ <xs:element name="option" type="xs:string" maxOccurs="unbounded"/>
+ </xs:sequence>
+ </xs:complexType>
+ </xs:element>
</xs:sequence>
</xs:complexType>
<xs:element name="options" type="tns:option" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="parameters" type="tns:parameter" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="prmSeparator" type="xs:string" minOccurs="0"/>
- <xs:element name="runnerClassName" type="xs:string" minOccurs="0"/>
+ <xs:element name="runnerClassName" type="xs:string"/>
</xs:sequence>
</xs:complexType>
<xs:complexContent>
<xs:extension base="tns:option">
<xs:sequence>
- <xs:element name="optionName" type="xs:string" minOccurs="0"/>
+ <xs:element name="possibleValues" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="validValue" type="tns:valueConstrain" minOccurs="0"/>
</xs:sequence>
</xs:extension>
<xs:complexType name="valueConstrain">
<xs:sequence>
- <xs:element name="type" type="tns:type" minOccurs="0"/>
+ <xs:element name="type" type="tns:type"/>
+ <xs:element name="max" type="xs:string" minOccurs="0"/>
+ <xs:element name="min" type="xs:string" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
</xs:sequence>
</xs:complexType>
- <xs:complexType name="alignment" final="extension restriction">
- <xs:sequence/>
+ <xs:complexType name="alignment">
+ <xs:sequence>
+ <xs:element name="metadata" type="tns:alignmentMetadata" minOccurs="0"/>
+ <xs:element name="sequences" type="tns:fastaSequence" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
+ </xs:sequence>
+ </xs:complexType>
+
+ <xs:complexType name="alignmentMetadata">
+ <xs:sequence>
+ <xs:element name="program" type="tns:program" minOccurs="0"/>
+ <xs:element name="gapchar" type="xs:unsignedShort"/>
+ </xs:sequence>
</xs:complexType>
<xs:complexType name="ResultNotAvailableException">
</xs:restriction>
</xs:simpleType>
+ <xs:simpleType name="program">
+ <xs:restriction base="xs:string">
+ <xs:enumeration value="CLUSTAL"/>
+ <xs:enumeration value="MAFFT"/>
+ <xs:enumeration value="MUSCLE"/>
+ <xs:enumeration value="Tcoffee"/>
+ <xs:enumeration value="Probcons"/>
+ <xs:enumeration value="Jpred"/>
+ </xs:restriction>
+ </xs:simpleType>
+
<xs:simpleType name="jobStatus">
<xs:restriction base="xs:string">
<xs:enumeration value="PENDING"/>