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Final fixing of Jpred problem with casting
[jabaws.git] / webservices / compbio / ws / server / resource / RNAalifoldWS.wsdl
diff --git a/webservices/compbio/ws/server/resource/RNAalifoldWS.wsdl b/webservices/compbio/ws/server/resource/RNAalifoldWS.wsdl
index fea5adb..6bfeef4 100644 (file)
--- a/webservices/compbio/ws/server/resource/RNAalifoldWS.wsdl
+++ b/webservices/compbio/ws/server/resource/RNAalifoldWS.wsdl
@@ -1,25 +1,25 @@
 <?xml version="1.0" encoding="UTF-8" standalone="yes"?>
 <!-- Generated by JAX-WS RI at http://jax-ws.dev.java.net. RI's version is Metro/2.1 (branches/2.1-6728; 2011-02-03T14:14:58+0000) JAXWS-RI/2.2.3 JAXWS/2.2. -->
-<definitions targetNamespace="http://msa.data.compbio/01/01/2010/" name="RNAalifoldWS" xmlns="http://schemas.xmlsoap.org/wsdl/" xmlns:wsp="http://www.w3.org/ns/ws-policy" xmlns:tns="http://msa.data.compbio/01/01/2010/" xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:wsp1_2="http://schemas.xmlsoap.org/ws/2004/09/policy" xmlns:soap="http://schemas.xmlsoap.org/wsdl/soap/" xmlns:wsam="http://www.w3.org/2007/05/addressing/metadata" xmlns:wsu="http://docs.oasis-open.org/wss/2004/01/oasis-200401-wss-wssecurity-utility-1.0.xsd">
+<definitions targetNamespace="http://msa.data.compbio/01/12/2010/" name="RNAalifoldWS" xmlns="http://schemas.xmlsoap.org/wsdl/" xmlns:wsp="http://www.w3.org/ns/ws-policy" xmlns:tns="http://msa.data.compbio/01/12/2010/" xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:wsp1_2="http://schemas.xmlsoap.org/ws/2004/09/policy" xmlns:soap="http://schemas.xmlsoap.org/wsdl/soap/" xmlns:wsam="http://www.w3.org/2007/05/addressing/metadata" xmlns:wsu="http://docs.oasis-open.org/wss/2004/01/oasis-200401-wss-wssecurity-utility-1.0.xsd">
   <types>
     <xsd:schema>
-      <xsd:import namespace="http://msa.data.compbio/01/01/2010/" schemaLocation="RNAalifoldWS_schema1.xsd"/>
+      <xsd:import namespace="http://msa.data.compbio/01/12/2010/" schemaLocation="RNAalifoldWS_schema1.xsd"/>
     </xsd:schema>
   </types>
-  <message name="getResult">
-    <part name="parameters" element="tns:getResult"/>
+  <message name="getAnnotation">
+    <part name="parameters" element="tns:getAnnotation"/>
   </message>
-  <message name="getResultResponse">
-    <part name="parameters" element="tns:getResultResponse"/>
+  <message name="getAnnotationResponse">
+    <part name="parameters" element="tns:getAnnotationResponse"/>
   </message>
   <message name="ResultNotAvailableException">
     <part name="fault" element="tns:ResultNotAvailableException"/>
   </message>
-  <message name="fold">
-    <part name="parameters" element="tns:fold"/>
+  <message name="analize">
+    <part name="parameters" element="tns:analize"/>
   </message>
-  <message name="foldResponse">
-    <part name="parameters" element="tns:foldResponse"/>
+  <message name="analizeResponse">
+    <part name="parameters" element="tns:analizeResponse"/>
   </message>
   <message name="UnsupportedRuntimeException">
     <part name="fault" element="tns:UnsupportedRuntimeException"/>
@@ -30,26 +30,20 @@
   <message name="JobSubmissionException">
     <part name="fault" element="tns:JobSubmissionException"/>
   </message>
-  <message name="presetFold">
-    <part name="parameters" element="tns:presetFold"/>
+  <message name="customAnalize">
+    <part name="parameters" element="tns:customAnalize"/>
   </message>
-  <message name="presetFoldResponse">
-    <part name="parameters" element="tns:presetFoldResponse"/>
+  <message name="customAnalizeResponse">
+    <part name="parameters" element="tns:customAnalizeResponse"/>
   </message>
   <message name="WrongParameterException">
     <part name="fault" element="tns:WrongParameterException"/>
   </message>
-  <message name="customFold">
-    <part name="parameters" element="tns:customFold"/>
+  <message name="presetAnalize">
+    <part name="parameters" element="tns:presetAnalize"/>
   </message>
-  <message name="customFoldResponse">
-    <part name="parameters" element="tns:customFoldResponse"/>
-  </message>
-  <message name="pullExecStatistics">
-    <part name="parameters" element="tns:pullExecStatistics"/>
-  </message>
-  <message name="pullExecStatisticsResponse">
-    <part name="parameters" element="tns:pullExecStatisticsResponse"/>
+  <message name="presetAnalizeResponse">
+    <part name="parameters" element="tns:presetAnalizeResponse"/>
   </message>
   <message name="cancelJob">
     <part name="parameters" element="tns:cancelJob"/>
@@ -63,6 +57,12 @@
   <message name="getJobStatusResponse">
     <part name="parameters" element="tns:getJobStatusResponse"/>
   </message>
+  <message name="pullExecStatistics">
+    <part name="parameters" element="tns:pullExecStatistics"/>
+  </message>
+  <message name="pullExecStatisticsResponse">
+    <part name="parameters" element="tns:pullExecStatisticsResponse"/>
+  </message>
   <message name="getRunnerOptions">
     <part name="parameters" element="tns:getRunnerOptions"/>
   </message>
@@ -87,67 +87,67 @@
   <message name="getPresetsResponse">
     <part name="parameters" element="tns:getPresetsResponse"/>
   </message>
-  <portType name="FoldWS">
-    <operation name="getResult">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/getResultRequest" message="tns:getResult"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/getResultResponse" message="tns:getResultResponse"/>
-      <fault message="tns:ResultNotAvailableException" name="ResultNotAvailableException" wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/getResult/Fault/ResultNotAvailableException"/>
-    </operation>
-    <operation name="fold">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/foldRequest" message="tns:fold"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/foldResponse" message="tns:foldResponse"/>
-      <fault message="tns:UnsupportedRuntimeException" name="UnsupportedRuntimeException" wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/fold/Fault/UnsupportedRuntimeException"/>
-      <fault message="tns:LimitExceededException" name="LimitExceededException" wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/fold/Fault/LimitExceededException"/>
-      <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/fold/Fault/JobSubmissionException"/>
+  <portType name="SequenceAnnotation">
+    <operation name="getAnnotation">
+      <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotationRequest" message="tns:getAnnotation"/>
+      <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotationResponse" message="tns:getAnnotationResponse"/>
+      <fault message="tns:ResultNotAvailableException" name="ResultNotAvailableException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotation/Fault/ResultNotAvailableException"/>
     </operation>
-    <operation name="presetFold">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/presetFoldRequest" message="tns:presetFold"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/presetFoldResponse" message="tns:presetFoldResponse"/>
-      <fault message="tns:UnsupportedRuntimeException" name="UnsupportedRuntimeException" wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/presetFold/Fault/UnsupportedRuntimeException"/>
-      <fault message="tns:LimitExceededException" name="LimitExceededException" wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/presetFold/Fault/LimitExceededException"/>
-      <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/presetFold/Fault/JobSubmissionException"/>
-      <fault message="tns:WrongParameterException" name="WrongParameterException" wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/presetFold/Fault/WrongParameterException"/>
+    <operation name="analize">
+      <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/analizeRequest" message="tns:analize"/>
+      <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/analizeResponse" message="tns:analizeResponse"/>
+      <fault message="tns:UnsupportedRuntimeException" name="UnsupportedRuntimeException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/analize/Fault/UnsupportedRuntimeException"/>
+      <fault message="tns:LimitExceededException" name="LimitExceededException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/analize/Fault/LimitExceededException"/>
+      <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/analize/Fault/JobSubmissionException"/>
     </operation>
-    <operation name="customFold">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/customFoldRequest" message="tns:customFold"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/customFoldResponse" message="tns:customFoldResponse"/>
-      <fault message="tns:UnsupportedRuntimeException" name="UnsupportedRuntimeException" wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/customFold/Fault/UnsupportedRuntimeException"/>
-      <fault message="tns:LimitExceededException" name="LimitExceededException" wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/customFold/Fault/LimitExceededException"/>
-      <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/customFold/Fault/JobSubmissionException"/>
-      <fault message="tns:WrongParameterException" name="WrongParameterException" wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/customFold/Fault/WrongParameterException"/>
+    <operation name="customAnalize">
+      <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/customAnalizeRequest" message="tns:customAnalize"/>
+      <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/customAnalizeResponse" message="tns:customAnalizeResponse"/>
+      <fault message="tns:UnsupportedRuntimeException" name="UnsupportedRuntimeException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/customAnalize/Fault/UnsupportedRuntimeException"/>
+      <fault message="tns:LimitExceededException" name="LimitExceededException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/customAnalize/Fault/LimitExceededException"/>
+      <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/customAnalize/Fault/JobSubmissionException"/>
+      <fault message="tns:WrongParameterException" name="WrongParameterException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/customAnalize/Fault/WrongParameterException"/>
     </operation>
-    <operation name="pullExecStatistics">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/pullExecStatisticsRequest" message="tns:pullExecStatistics"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/pullExecStatisticsResponse" message="tns:pullExecStatisticsResponse"/>
+    <operation name="presetAnalize">
+      <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/presetAnalizeRequest" message="tns:presetAnalize"/>
+      <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/presetAnalizeResponse" message="tns:presetAnalizeResponse"/>
+      <fault message="tns:UnsupportedRuntimeException" name="UnsupportedRuntimeException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/presetAnalize/Fault/UnsupportedRuntimeException"/>
+      <fault message="tns:LimitExceededException" name="LimitExceededException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/presetAnalize/Fault/LimitExceededException"/>
+      <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/presetAnalize/Fault/JobSubmissionException"/>
+      <fault message="tns:WrongParameterException" name="WrongParameterException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/presetAnalize/Fault/WrongParameterException"/>
     </operation>
     <operation name="cancelJob">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/cancelJobRequest" message="tns:cancelJob"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/cancelJobResponse" message="tns:cancelJobResponse"/>
+      <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/cancelJobRequest" message="tns:cancelJob"/>
+      <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/cancelJobResponse" message="tns:cancelJobResponse"/>
     </operation>
     <operation name="getJobStatus">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/getJobStatusRequest" message="tns:getJobStatus"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/getJobStatusResponse" message="tns:getJobStatusResponse"/>
+      <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getJobStatusRequest" message="tns:getJobStatus"/>
+      <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getJobStatusResponse" message="tns:getJobStatusResponse"/>
+    </operation>
+    <operation name="pullExecStatistics">
+      <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/pullExecStatisticsRequest" message="tns:pullExecStatistics"/>
+      <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/pullExecStatisticsResponse" message="tns:pullExecStatisticsResponse"/>
     </operation>
     <operation name="getRunnerOptions">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/getRunnerOptionsRequest" message="tns:getRunnerOptions"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/getRunnerOptionsResponse" message="tns:getRunnerOptionsResponse"/>
+      <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getRunnerOptionsRequest" message="tns:getRunnerOptions"/>
+      <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getRunnerOptionsResponse" message="tns:getRunnerOptionsResponse"/>
     </operation>
     <operation name="getLimit">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/getLimitRequest" message="tns:getLimit"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/getLimitResponse" message="tns:getLimitResponse"/>
+      <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getLimitRequest" message="tns:getLimit"/>
+      <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getLimitResponse" message="tns:getLimitResponse"/>
     </operation>
     <operation name="getLimits">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/getLimitsRequest" message="tns:getLimits"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/getLimitsResponse" message="tns:getLimitsResponse"/>
+      <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getLimitsRequest" message="tns:getLimits"/>
+      <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getLimitsResponse" message="tns:getLimitsResponse"/>
     </operation>
     <operation name="getPresets">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/getPresetsRequest" message="tns:getPresets"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/getPresetsResponse" message="tns:getPresetsResponse"/>
+      <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getPresetsRequest" message="tns:getPresets"/>
+      <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getPresetsResponse" message="tns:getPresetsResponse"/>
     </operation>
   </portType>
-  <binding name="RNAalifoldWSPortBinding" type="tns:FoldWS">
+  <binding name="RNAalifoldWSPortBinding" type="tns:SequenceAnnotation">
     <soap:binding transport="http://schemas.xmlsoap.org/soap/http" style="document"/>
-    <operation name="getResult">
+    <operation name="getAnnotation">
       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>
@@ -159,7 +159,7 @@
         <soap:fault name="ResultNotAvailableException" use="literal"/>
       </fault>
     </operation>
-    <operation name="fold">
+    <operation name="analize">
       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>
@@ -177,7 +177,7 @@
         <soap:fault name="JobSubmissionException" use="literal"/>
       </fault>
     </operation>
-    <operation name="presetFold">
+    <operation name="customAnalize">
       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>
@@ -198,7 +198,7 @@
         <soap:fault name="WrongParameterException" use="literal"/>
       </fault>
     </operation>
-    <operation name="customFold">
+    <operation name="presetAnalize">
       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>
@@ -219,7 +219,7 @@
         <soap:fault name="WrongParameterException" use="literal"/>
       </fault>
     </operation>
-    <operation name="pullExecStatistics">
+    <operation name="cancelJob">
       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>
@@ -228,7 +228,7 @@
         <soap:body use="literal"/>
       </output>
     </operation>
-    <operation name="cancelJob">
+    <operation name="getJobStatus">
       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>
@@ -237,7 +237,7 @@
         <soap:body use="literal"/>
       </output>
     </operation>
-    <operation name="getJobStatus">
+    <operation name="pullExecStatistics">
       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>