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[jabaws.git] / website / dm_javadoc / compbio / data / sequence / Program.html
diff --git a/website/dm_javadoc/compbio/data/sequence/Program.html b/website/dm_javadoc/compbio/data/sequence/Program.html
index 909a998..f1a55bf 100644 (file)
--- a/website/dm_javadoc/compbio/data/sequence/Program.html
+++ b/website/dm_javadoc/compbio/data/sequence/Program.html
@@ -2,12 +2,12 @@
 <!--NewPage-->\r
 <HTML>\r
 <HEAD>\r
-<!-- Generated by javadoc (build 1.6.0_21) on Wed Nov 24 12:17:18 GMT 2010 -->\r
+<!-- Generated by javadoc (build 1.6.0_21) on Thu Dec 09 12:00:28 GMT 2010 -->\r
 <TITLE>\r
 Program\r
 </TITLE>\r
 \r
-<META NAME="date" CONTENT="2010-11-24">\r
+<META NAME="date" CONTENT="2010-12-09">\r
 \r
 <LINK REL ="stylesheet" TYPE="text/css" HREF="../../../stylesheet.css" TITLE="Style">\r
 \r
@@ -55,8 +55,8 @@ function windowTitle()
 \r
 <TR>\r
 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
-&nbsp;<A HREF="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence"><B>PREV CLASS</B></A>&nbsp;\r
-&nbsp;<A HREF="../../../compbio/data/sequence/SequenceUtil.html" title="class in compbio.data.sequence"><B>NEXT CLASS</B></A></FONT></TD>\r
+&nbsp;<A HREF="../../../compbio/data/sequence/MultiAnnotatedSequence.html" title="class in compbio.data.sequence"><B>PREV CLASS</B></A>&nbsp;\r
+&nbsp;<A HREF="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence"><B>NEXT CLASS</B></A></FONT></TD>\r
 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
   <A HREF="../../../index.html?compbio/data/sequence/Program.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
 &nbsp;<A HREF="Program.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
@@ -188,7 +188,7 @@ the order they are declared.</TD>
 <TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true" title="class or interface in java.lang">Enum</A></B></TH>\r
 </TR>\r
 <TR BGCOLOR="white" CLASS="TableRowColor">\r
-<TD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true#clone()" title="class or interface in java.lang">clone</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true#compareTo(E)" title="class or interface in java.lang">compareTo</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true#finalize()" title="class or interface in java.lang">finalize</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true#getDeclaringClass()" title="class or interface in java.lang">getDeclaringClass</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true#name()" title="class or interface in java.lang">name</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true#ordinal()" title="class or interface in java.lang">ordinal</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true#toString()" title="class or interface in java.lang">toString</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true#valueOf(java.lang.Class, java.lang.String)" title="class or interface in java.lang">valueOf</A></CODE></TD>\r
+<TD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true#compareTo(E)" title="class or interface in java.lang">compareTo</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true#getDeclaringClass()" title="class or interface in java.lang">getDeclaringClass</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true#name()" title="class or interface in java.lang">name</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true#ordinal()" title="class or interface in java.lang">ordinal</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true#toString()" title="class or interface in java.lang">toString</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true#valueOf(java.lang.Class, java.lang.String)" title="class or interface in java.lang">valueOf</A></CODE></TD>\r
 </TR>\r
 </TABLE>\r
 &nbsp;<A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>\r
@@ -353,8 +353,8 @@ with the specified name
 \r
 <TR>\r
 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
-&nbsp;<A HREF="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence"><B>PREV CLASS</B></A>&nbsp;\r
-&nbsp;<A HREF="../../../compbio/data/sequence/SequenceUtil.html" title="class in compbio.data.sequence"><B>NEXT CLASS</B></A></FONT></TD>\r
+&nbsp;<A HREF="../../../compbio/data/sequence/MultiAnnotatedSequence.html" title="class in compbio.data.sequence"><B>PREV CLASS</B></A>&nbsp;\r
+&nbsp;<A HREF="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence"><B>NEXT CLASS</B></A></FONT></TD>\r
 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
   <A HREF="../../../index.html?compbio/data/sequence/Program.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
 &nbsp;<A HREF="Program.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r