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remove mafft extensions - we do not support them
[jabaws.git] / website / dm_javadoc / index-files / index-17.html
diff --git a/website/dm_javadoc/index-files/index-17.html b/website/dm_javadoc/index-files/index-17.html
index bcedbe3..565c4d4 100644 (file)
--- a/website/dm_javadoc/index-files/index-17.html
+++ b/website/dm_javadoc/index-files/index-17.html
@@ -2,12 +2,12 @@
 <!--NewPage-->\r
 <HTML>\r
 <HEAD>\r
-<!-- Generated by javadoc (build 1.6.0_21) on Thu Dec 09 12:00:29 GMT 2010 -->\r
+<!-- Generated by javadoc (build 1.6.0_21) on Wed Nov 24 12:17:19 GMT 2010 -->\r
 <TITLE>\r
 T-Index\r
 </TITLE>\r
 \r
-<META NAME="date" CONTENT="2010-12-09">\r
+<META NAME="date" CONTENT="2010-11-24">\r
 \r
 <LINK REL ="stylesheet" TYPE="text/css" HREF="../stylesheet.css" TITLE="Style">\r
 \r
@@ -88,24 +88,12 @@ Method in class compbio.metadata.<A HREF="../compbio/metadata/Option.html" title
 <DT><A HREF="../compbio/metadata/Parameter.html#toCommand(java.lang.String)"><B>toCommand(String)</B></A> - \r
 Method in class compbio.metadata.<A HREF="../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</A>\r
 <DD>&nbsp;\r
-<DT><A HREF="../compbio/data/sequence/MultiAnnotatedSequence.html#toJalviewAnnotation()"><B>toJalviewAnnotation()</B></A> - \r
-Method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/MultiAnnotatedSequence.html" title="class in compbio.data.sequence">MultiAnnotatedSequence</A>\r
-<DD>&nbsp;\r
 <DT><A HREF="../compbio/data/sequence/Alignment.html#toString()"><B>toString()</B></A> - \r
 Method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</A>\r
 <DD>&nbsp;\r
-<DT><A HREF="../compbio/data/sequence/AnnotatedSequence.html#toString()"><B>toString()</B></A> - \r
-Method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/AnnotatedSequence.html" title="class in compbio.data.sequence">AnnotatedSequence</A>\r
-<DD>&nbsp;\r
 <DT><A HREF="../compbio/data/sequence/FastaSequence.html#toString()"><B>toString()</B></A> - \r
 Method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>\r
 <DD>Same as oneLineFasta\r
-<DT><A HREF="../compbio/data/sequence/MultiAnnotatedSequence.html#toString()"><B>toString()</B></A> - \r
-Method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/MultiAnnotatedSequence.html" title="class in compbio.data.sequence">MultiAnnotatedSequence</A>\r
-<DD>&nbsp;\r
-<DT><A HREF="../compbio/data/sequence/Score.html#toString()"><B>toString()</B></A> - \r
-Method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</A>\r
-<DD>&nbsp;\r
 <DT><A HREF="../compbio/metadata/ChunkHolder.html#toString()"><B>toString()</B></A> - \r
 Method in class compbio.metadata.<A HREF="../compbio/metadata/ChunkHolder.html" title="class in compbio.metadata">ChunkHolder</A>\r
 <DD>&nbsp;\r