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Correct log4j file
[jabaws.git] / website / dm_javadoc / index-files / index-5.html
diff --git a/website/dm_javadoc/index-files/index-5.html b/website/dm_javadoc/index-files/index-5.html
index 1a48e75..ff314b0 100644 (file)
--- a/website/dm_javadoc/index-files/index-5.html
+++ b/website/dm_javadoc/index-files/index-5.html
@@ -2,12 +2,12 @@
 <!--NewPage-->\r
 <HTML>\r
 <HEAD>\r
-<!-- Generated by javadoc (build 1.6.0_21) on Tue Dec 21 18:32:59 GMT 2010 -->\r
+<!-- Generated by javadoc (build 1.6.0_24) on Wed Dec 07 12:08:25 GMT 2011 -->\r
 <TITLE>\r
 F-Index\r
 </TITLE>\r
 \r
-<META NAME="date" CONTENT="2010-12-21">\r
+<META NAME="date" CONTENT="2011-12-07">\r
 \r
 <LINK REL ="stylesheet" TYPE="text/css" HREF="../stylesheet.css" TITLE="Style">\r
 \r
@@ -82,10 +82,26 @@ function windowTitle()
 <A NAME="_F_"><!-- --></A><H2>\r
 <B>F</B></H2>\r
 <DL>\r
+<DT><A HREF="../compbio/ws/client/WSTester.html#fastaAlignment"><B>fastaAlignment</B></A> - \r
+Static variable in class compbio.ws.client.<A HREF="../compbio/ws/client/WSTester.html" title="class in compbio.ws.client">WSTester</A>\r
+<DD>&nbsp;\r
+<DT><A HREF="../compbio/ws/client/WSTester.html#fastaInput"><B>fastaInput</B></A> - \r
+Static variable in class compbio.ws.client.<A HREF="../compbio/ws/client/WSTester.html" title="class in compbio.ws.client">WSTester</A>\r
+<DD>Sequences to be used as input for all WS\r
+<DT><A HREF="../compbio/data/sequence/FastaReader.html" title="class in compbio.data.sequence"><B>FastaReader</B></A> - Class in <A HREF="../compbio/data/sequence/package-summary.html">compbio.data.sequence</A><DD>Reads files with FASTA formatted sequences.<DT><A HREF="../compbio/data/sequence/FastaReader.html#FastaReader(java.lang.String)"><B>FastaReader(String)</B></A> - \r
+Constructor for class compbio.data.sequence.<A HREF="../compbio/data/sequence/FastaReader.html" title="class in compbio.data.sequence">FastaReader</A>\r
+<DD>Header data can contain non-ASCII symbols and read in UTF8\r
+<DT><A HREF="../compbio/data/sequence/FastaReader.html#FastaReader(java.io.InputStream)"><B>FastaReader(InputStream)</B></A> - \r
+Constructor for class compbio.data.sequence.<A HREF="../compbio/data/sequence/FastaReader.html" title="class in compbio.data.sequence">FastaReader</A>\r
+<DD>This class will not close the incoming stream! So the client should do
+ so.\r
 <DT><A HREF="../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence"><B>FastaSequence</B></A> - Class in <A HREF="../compbio/data/sequence/package-summary.html">compbio.data.sequence</A><DD>A FASTA formatted sequence.<DT><A HREF="../compbio/data/sequence/FastaSequence.html#FastaSequence(java.lang.String, java.lang.String)"><B>FastaSequence(String, String)</B></A> - \r
 Constructor for class compbio.data.sequence.<A HREF="../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>\r
 <DD>Upon construction the any whitespace characters are removed from the
  sequence\r
+<DT><A HREF="../compbio/data/sequence/Range.html#from"><B>from</B></A> - \r
+Variable in class compbio.data.sequence.<A HREF="../compbio/data/sequence/Range.html" title="class in compbio.data.sequence">Range</A>\r
+<DD>&nbsp;\r
 </DL>\r
 <HR>\r
 \r