<!--NewPage-->\r
<HTML>\r
<HEAD>\r
-<!-- Generated by javadoc (build 1.6.0_14) on Wed Feb 17 16:46:49 GMT 2010 -->\r
+<!-- Generated by javadoc (build 1.6.0_24) on Wed Dec 07 12:30:41 GMT 2011 -->\r
<TITLE>\r
FilePuller\r
</TITLE>\r
\r
-<META NAME="date" CONTENT="2010-02-17">\r
+<META NAME="date" CONTENT="2011-12-07">\r
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<LINK REL ="stylesheet" TYPE="text/css" HREF="../../stylesheet.css" TITLE="Style">\r
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<BR>\r
Class FilePuller</H2>\r
<PRE>\r
-java.lang.Object\r
+<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">java.lang.Object</A>\r
<IMG SRC="../../resources/inherit.gif" ALT="extended by "><B>compbio.engine.FilePuller</B>\r
</PRE>\r
<DL>\r
-<DT><B>All Implemented Interfaces:</B> <DD>java.lang.Comparable<java.util.concurrent.Delayed>, java.util.concurrent.Delayed</DD>\r
+<DT><B>All Implemented Interfaces:</B> <DD><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Comparable.html?is-external=true" title="class or interface in java.lang">Comparable</A><<A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/Delayed.html?is-external=true" title="class or interface in java.util.concurrent">Delayed</A>>, <A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/Delayed.html?is-external=true" title="class or interface in java.util.concurrent">Delayed</A></DD>\r
</DL>\r
<HR>\r
<DL>\r
-<DT><PRE>public class <B>FilePuller</B><DT>extends java.lang.Object<DT>implements java.util.concurrent.Delayed</DL>\r
+<DT><PRE>public class <B>FilePuller</B><DT>extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A><DT>implements <A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/Delayed.html?is-external=true" title="class or interface in java.util.concurrent">Delayed</A></DL>\r
</PRE>\r
\r
<P>\r
<TR BGCOLOR="white" CLASS="TableRowColor">\r
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
<CODE> int</CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#compareTo(java.util.concurrent.Delayed)">compareTo</A></B>(java.util.concurrent.Delayed o)</CODE>\r
+<TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#compareTo(java.util.concurrent.Delayed)">compareTo</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/Delayed.html?is-external=true" title="class or interface in java.util.concurrent">Delayed</A> o)</CODE>\r
\r
<BR>\r
</TD>\r
<TR BGCOLOR="white" CLASS="TableRowColor">\r
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
<CODE> boolean</CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#equals(java.lang.Object)">equals</A></B>(java.lang.Object obj)</CODE>\r
+<TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#equals(java.lang.Object)">equals</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A> obj)</CODE>\r
\r
<BR>\r
</TD>\r
<TR BGCOLOR="white" CLASS="TableRowColor">\r
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
<CODE> long</CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#getDelay(java.util.concurrent.TimeUnit)">getDelay</A></B>(java.util.concurrent.TimeUnit unit)</CODE>\r
+<TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#getDelay(java.util.concurrent.TimeUnit)">getDelay</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/TimeUnit.html?is-external=true" title="class or interface in java.util.concurrent">TimeUnit</A> unit)</CODE>\r
\r
<BR>\r
</TD>\r
</TR>\r
<TR BGCOLOR="white" CLASS="TableRowColor">\r
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
-<CODE> java.lang.String</CODE></FONT></TD>\r
+<CODE> <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
<TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#getFile()">getFile</A></B>()</CODE>\r
\r
<BR>\r
<TR BGCOLOR="white" CLASS="TableRowColor">\r
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
<CODE>static <A HREF="../../compbio/engine/FilePuller.html" title="class in compbio.engine">FilePuller</A></CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#newFilePuller(java.lang.String, int)">newFilePuller</A></B>(java.lang.String file,\r
+<TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#newFilePuller(java.lang.String, int)">newFilePuller</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> file,\r
int chunkSize)</CODE>\r
\r
<BR>\r
<TR BGCOLOR="white" CLASS="TableRowColor">\r
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
<CODE>static <A HREF="../../compbio/engine/FilePuller.html" title="class in compbio.engine">FilePuller</A></CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#newProgressPuller(java.lang.String)">newProgressPuller</A></B>(java.lang.String file)</CODE>\r
+<TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#newProgressPuller(java.lang.String)">newProgressPuller</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> file)</CODE>\r
\r
<BR>\r
Progress Puller is designed to read 3 characters from the beginning of
</TR>\r
<TR BGCOLOR="white" CLASS="TableRowColor">\r
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
-<CODE> java.lang.String</CODE></FONT></TD>\r
+<CODE> <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
<TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#toString()">toString</A></B>()</CODE>\r
\r
<BR>\r
<A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>\r
<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
<TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">\r
-<TH ALIGN="left"><B>Methods inherited from class java.lang.Object</B></TH>\r
+<TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></B></TH>\r
</TR>\r
<TR BGCOLOR="white" CLASS="TableRowColor">\r
-<TD><CODE>getClass, notify, notifyAll, wait, wait, wait</CODE></TD>\r
+<TD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#getClass()" title="class or interface in java.lang">getClass</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notify()" title="class or interface in java.lang">notify</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notifyAll()" title="class or interface in java.lang">notifyAll</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait()" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long)" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long, int)" title="class or interface in java.lang">wait</A></CODE></TD>\r
</TR>\r
</TABLE>\r
\r
<A NAME="newFilePuller(java.lang.String, int)"><!-- --></A><H3>\r
newFilePuller</H3>\r
<PRE>\r
-public static <A HREF="../../compbio/engine/FilePuller.html" title="class in compbio.engine">FilePuller</A> <B>newFilePuller</B>(java.lang.String file,\r
+public static <A HREF="../../compbio/engine/FilePuller.html" title="class in compbio.engine">FilePuller</A> <B>newFilePuller</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> file,\r
int chunkSize)</PRE>\r
<DL>\r
<DD><DL>\r
<A NAME="newProgressPuller(java.lang.String)"><!-- --></A><H3>\r
newProgressPuller</H3>\r
<PRE>\r
-public static <A HREF="../../compbio/engine/FilePuller.html" title="class in compbio.engine">FilePuller</A> <B>newProgressPuller</B>(java.lang.String file)</PRE>\r
+public static <A HREF="../../compbio/engine/FilePuller.html" title="class in compbio.engine">FilePuller</A> <B>newProgressPuller</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> file)</PRE>\r
<DL>\r
<DD>Progress Puller is designed to read 3 characters from the beginning of
the file, nothing more. Intended to be used in conjunction with a tool
</DD>\r
<DD><DL>\r
<DT><B>Parameters:</B><DD><CODE>file</CODE> - \r
-<DT><B>Returns:</B><DD></DL>\r
+<DT><B>Returns:</B><DD>instance</DL>\r
</DD>\r
</DL>\r
<HR>\r
pull</H3>\r
<PRE>\r
public <A HREF="../../compbio/metadata/ChunkHolder.html" title="class in compbio.metadata">ChunkHolder</A> <B>pull</B>(long position)\r
- throws java.io.IOException</PRE>\r
+ throws <A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></PRE>\r
<DL>\r
<DD><DL>\r
</DL>\r
<DD><DL>\r
\r
<DT><B>Throws:</B>\r
-<DD><CODE>java.io.IOException</CODE></DL>\r
+<DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></CODE></DL>\r
</DD>\r
</DL>\r
<HR>\r
<A NAME="getFile()"><!-- --></A><H3>\r
getFile</H3>\r
<PRE>\r
-public java.lang.String <B>getFile</B>()</PRE>\r
+public <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>getFile</B>()</PRE>\r
<DL>\r
<DD><DL>\r
</DL>\r
hasMoreData</H3>\r
<PRE>\r
public boolean <B>hasMoreData</B>()\r
- throws java.io.IOException</PRE>\r
+ throws <A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></PRE>\r
<DL>\r
<DD><DL>\r
</DL>\r
<DD><DL>\r
\r
<DT><B>Throws:</B>\r
-<DD><CODE>java.io.IOException</CODE></DL>\r
+<DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></CODE></DL>\r
</DD>\r
</DL>\r
<HR>\r
<A NAME="compareTo(java.util.concurrent.Delayed)"><!-- --></A><H3>\r
compareTo</H3>\r
<PRE>\r
-public int <B>compareTo</B>(java.util.concurrent.Delayed o)</PRE>\r
+public int <B>compareTo</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/Delayed.html?is-external=true" title="class or interface in java.util.concurrent">Delayed</A> o)</PRE>\r
<DL>\r
<DD><DL>\r
-<DT><B>Specified by:</B><DD><CODE>compareTo</CODE> in interface <CODE>java.lang.Comparable<java.util.concurrent.Delayed></CODE></DL>\r
+<DT><B>Specified by:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Comparable.html?is-external=true#compareTo(T)" title="class or interface in java.lang">compareTo</A></CODE> in interface <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Comparable.html?is-external=true" title="class or interface in java.lang">Comparable</A><<A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/Delayed.html?is-external=true" title="class or interface in java.util.concurrent">Delayed</A>></CODE></DL>\r
</DD>\r
<DD><DL>\r
</DL>\r
<A NAME="getDelay(java.util.concurrent.TimeUnit)"><!-- --></A><H3>\r
getDelay</H3>\r
<PRE>\r
-public long <B>getDelay</B>(java.util.concurrent.TimeUnit unit)</PRE>\r
+public long <B>getDelay</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/TimeUnit.html?is-external=true" title="class or interface in java.util.concurrent">TimeUnit</A> unit)</PRE>\r
<DL>\r
<DD><DL>\r
-<DT><B>Specified by:</B><DD><CODE>getDelay</CODE> in interface <CODE>java.util.concurrent.Delayed</CODE></DL>\r
+<DT><B>Specified by:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/Delayed.html?is-external=true#getDelay(java.util.concurrent.TimeUnit)" title="class or interface in java.util.concurrent">getDelay</A></CODE> in interface <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/Delayed.html?is-external=true" title="class or interface in java.util.concurrent">Delayed</A></CODE></DL>\r
</DD>\r
<DD><DL>\r
</DL>\r
<A NAME="toString()"><!-- --></A><H3>\r
toString</H3>\r
<PRE>\r
-public java.lang.String <B>toString</B>()</PRE>\r
+public <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>toString</B>()</PRE>\r
<DL>\r
<DD><DL>\r
-<DT><B>Overrides:</B><DD><CODE>toString</CODE> in class <CODE>java.lang.Object</CODE></DL>\r
+<DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#toString()" title="class or interface in java.lang">toString</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>\r
</DD>\r
<DD><DL>\r
</DL>\r
<A NAME="equals(java.lang.Object)"><!-- --></A><H3>\r
equals</H3>\r
<PRE>\r
-public boolean <B>equals</B>(java.lang.Object obj)</PRE>\r
+public boolean <B>equals</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A> obj)</PRE>\r
<DL>\r
<DD><DL>\r
-<DT><B>Overrides:</B><DD><CODE>equals</CODE> in class <CODE>java.lang.Object</CODE></DL>\r
+<DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>\r
</DD>\r
<DD><DL>\r
</DL>\r
public int <B>hashCode</B>()</PRE>\r
<DL>\r
<DD><DL>\r
-<DT><B>Overrides:</B><DD><CODE>hashCode</CODE> in class <CODE>java.lang.Object</CODE></DL>\r
+<DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>\r
</DD>\r
<DD><DL>\r
</DL>\r
getProgress</H3>\r
<PRE>\r
public byte <B>getProgress</B>()\r
- throws java.io.IOException</PRE>\r
+ throws <A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></PRE>\r
<DL>\r
<DD><DL>\r
</DL>\r
<DD><DL>\r
\r
<DT><B>Throws:</B>\r
-<DD><CODE>java.io.IOException</CODE></DL>\r
+<DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></CODE></DL>\r
</DD>\r
</DL>\r
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