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Re-formatting the file
[jabaws.git] / website / full_javadoc / compbio / engine / client / PathValidator.html
diff --git a/website/full_javadoc/compbio/engine/client/PathValidator.html b/website/full_javadoc/compbio/engine/client/PathValidator.html
index d83660e..ef6cd60 100644 (file)
--- a/website/full_javadoc/compbio/engine/client/PathValidator.html
+++ b/website/full_javadoc/compbio/engine/client/PathValidator.html
@@ -2,12 +2,12 @@
 <!--NewPage-->\r
 <HTML>\r
 <HEAD>\r
-<!-- Generated by javadoc (build 1.6.0_14) on Wed Feb 17 16:46:49 GMT 2010 -->\r
+<!-- Generated by javadoc (build 1.6.0_24) on Wed Dec 07 12:30:41 GMT 2011 -->\r
 <TITLE>\r
 PathValidator\r
 </TITLE>\r
 \r
-<META NAME="date" CONTENT="2010-02-17">\r
+<META NAME="date" CONTENT="2011-12-07">\r
 \r
 <LINK REL ="stylesheet" TYPE="text/css" HREF="../../../stylesheet.css" TITLE="Style">\r
 \r
@@ -92,12 +92,12 @@ compbio.engine.client</FONT>
 <BR>\r
 Class PathValidator</H2>\r
 <PRE>\r
-java.lang.Object\r
+<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">java.lang.Object</A>\r
   <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><B>compbio.engine.client.PathValidator</B>\r
 </PRE>\r
 <HR>\r
 <DL>\r
-<DT><PRE>public final class <B>PathValidator</B><DT>extends java.lang.Object</DL>\r
+<DT><PRE>public final class <B>PathValidator</B><DT>extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></DL>\r
 </PRE>\r
 \r
 <P>\r
@@ -132,7 +132,7 @@ java.lang.Object
 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 <CODE>static&nbsp;boolean</CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../../compbio/engine/client/PathValidator.html#isAbsolutePath(java.lang.String)">isAbsolutePath</A></B>(java.lang.String&nbsp;path)</CODE>\r
+<TD><CODE><B><A HREF="../../../compbio/engine/client/PathValidator.html#isAbsolutePath(java.lang.String)">isAbsolutePath</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;path)</CODE>\r
 \r
 <BR>\r
 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Whether a certain path is absolute or not is operation system dependent!</TD>\r
@@ -140,7 +140,7 @@ java.lang.Object
 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 <CODE>static&nbsp;boolean</CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../../compbio/engine/client/PathValidator.html#isValidDirectory(java.lang.String)">isValidDirectory</A></B>(java.lang.String&nbsp;directory)</CODE>\r
+<TD><CODE><B><A HREF="../../../compbio/engine/client/PathValidator.html#isValidDirectory(java.lang.String)">isValidDirectory</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;directory)</CODE>\r
 \r
 <BR>\r
 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
@@ -148,7 +148,7 @@ java.lang.Object
 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 <CODE>static&nbsp;boolean</CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../../compbio/engine/client/PathValidator.html#isValidExecutable(java.lang.String)">isValidExecutable</A></B>(java.lang.String&nbsp;command)</CODE>\r
+<TD><CODE><B><A HREF="../../../compbio/engine/client/PathValidator.html#isValidExecutable(java.lang.String)">isValidExecutable</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;command)</CODE>\r
 \r
 <BR>\r
 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
@@ -156,7 +156,7 @@ java.lang.Object
 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 <CODE>static&nbsp;void</CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../../compbio/engine/client/PathValidator.html#validateDirectory(java.lang.String)">validateDirectory</A></B>(java.lang.String&nbsp;workDirectory)</CODE>\r
+<TD><CODE><B><A HREF="../../../compbio/engine/client/PathValidator.html#validateDirectory(java.lang.String)">validateDirectory</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;workDirectory)</CODE>\r
 \r
 <BR>\r
 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
@@ -164,7 +164,7 @@ java.lang.Object
 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 <CODE>static&nbsp;void</CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../../compbio/engine/client/PathValidator.html#validateExecutable(java.lang.String)">validateExecutable</A></B>(java.lang.String&nbsp;command)</CODE>\r
+<TD><CODE><B><A HREF="../../../compbio/engine/client/PathValidator.html#validateExecutable(java.lang.String)">validateExecutable</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;command)</CODE>\r
 \r
 <BR>\r
 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
@@ -172,8 +172,8 @@ java.lang.Object
 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 <CODE>static&nbsp;void</CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../../compbio/engine/client/PathValidator.html#validatePathNames(java.util.List, java.lang.String)">validatePathNames</A></B>(java.util.List&lt;java.lang.String&gt;&nbsp;filenames,\r
-                  java.lang.String&nbsp;type)</CODE>\r
+<TD><CODE><B><A HREF="../../../compbio/engine/client/PathValidator.html#validatePathNames(java.util.List, java.lang.String)">validatePathNames</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&gt;&nbsp;filenames,\r
+                  <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;type)</CODE>\r
 \r
 <BR>\r
 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
@@ -182,10 +182,10 @@ java.lang.Object
 &nbsp;<A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>\r
 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">\r
-<TH ALIGN="left"><B>Methods inherited from class java.lang.Object</B></TH>\r
+<TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></B></TH>\r
 </TR>\r
 <TR BGCOLOR="white" CLASS="TableRowColor">\r
-<TD><CODE>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</CODE></TD>\r
+<TD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#getClass()" title="class or interface in java.lang">getClass</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notify()" title="class or interface in java.lang">notify</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notifyAll()" title="class or interface in java.lang">notifyAll</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#toString()" title="class or interface in java.lang">toString</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait()" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long)" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long, int)" title="class or interface in java.lang">wait</A></CODE></TD>\r
 </TR>\r
 </TABLE>\r
 &nbsp;\r
@@ -221,7 +221,7 @@ public <B>PathValidator</B>()</PRE>
 <A NAME="isValidExecutable(java.lang.String)"><!-- --></A><H3>\r
 isValidExecutable</H3>\r
 <PRE>\r
-public static boolean <B>isValidExecutable</B>(java.lang.String&nbsp;command)</PRE>\r
+public static boolean <B>isValidExecutable</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;command)</PRE>\r
 <DL>\r
 <DD><DL>\r
 </DL>\r
@@ -232,13 +232,13 @@ public static boolean <B>isValidExecutable</B>(java.lang.String&nbsp;command)</P
 <A NAME="validateExecutable(java.lang.String)"><!-- --></A><H3>\r
 validateExecutable</H3>\r
 <PRE>\r
-public static void <B>validateExecutable</B>(java.lang.String&nbsp;command)\r
-                               throws java.lang.IllegalArgumentException</PRE>\r
+public static void <B>validateExecutable</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;command)\r
+                               throws <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/IllegalArgumentException.html?is-external=true" title="class or interface in java.lang">IllegalArgumentException</A></PRE>\r
 <DL>\r
 <DD><DL>\r
 \r
 <DT><B>Throws:</B>\r
-<DD><CODE>java.lang.IllegalArgumentException</CODE></DL>\r
+<DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/IllegalArgumentException.html?is-external=true" title="class or interface in java.lang">IllegalArgumentException</A></CODE></DL>\r
 </DD>\r
 </DL>\r
 <HR>\r
@@ -246,7 +246,7 @@ public static void <B>validateExecutable</B>(java.lang.String&nbsp;command)
 <A NAME="isValidDirectory(java.lang.String)"><!-- --></A><H3>\r
 isValidDirectory</H3>\r
 <PRE>\r
-public static boolean <B>isValidDirectory</B>(java.lang.String&nbsp;directory)</PRE>\r
+public static boolean <B>isValidDirectory</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;directory)</PRE>\r
 <DL>\r
 <DD><DL>\r
 </DL>\r
@@ -257,15 +257,15 @@ public static boolean <B>isValidDirectory</B>(java.lang.String&nbsp;directory)</
 <A NAME="validatePathNames(java.util.List, java.lang.String)"><!-- --></A><H3>\r
 validatePathNames</H3>\r
 <PRE>\r
-public static void <B>validatePathNames</B>(java.util.List&lt;java.lang.String&gt;&nbsp;filenames,\r
-                                     java.lang.String&nbsp;type)\r
-                              throws java.lang.IllegalArgumentException</PRE>\r
+public static void <B>validatePathNames</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&gt;&nbsp;filenames,\r
+                                     <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;type)\r
+                              throws <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/IllegalArgumentException.html?is-external=true" title="class or interface in java.lang">IllegalArgumentException</A></PRE>\r
 <DL>\r
 <DD><DL>\r
 <DT><B>Parameters:</B><DD><CODE>filenames</CODE> - <DD><CODE>type</CODE> - - merely a string to be added to error message to explain what
             type of files are lacking\r
 <DT><B>Throws:</B>\r
-<DD><CODE>java.lang.IllegalArgumentException</CODE></DL>\r
+<DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/IllegalArgumentException.html?is-external=true" title="class or interface in java.lang">IllegalArgumentException</A></CODE></DL>\r
 </DD>\r
 </DL>\r
 <HR>\r
@@ -273,13 +273,13 @@ public static void <B>validatePathNames</B>(java.util.List&lt;java.lang.String&g
 <A NAME="isAbsolutePath(java.lang.String)"><!-- --></A><H3>\r
 isAbsolutePath</H3>\r
 <PRE>\r
-public static boolean <B>isAbsolutePath</B>(java.lang.String&nbsp;path)</PRE>\r
+public static boolean <B>isAbsolutePath</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;path)</PRE>\r
 <DL>\r
 <DD>Whether a certain path is absolute or not is operation system dependent!\r
 <P>\r
 <DD><DL>\r
 <DT><B>Parameters:</B><DD><CODE>path</CODE> - \r
-<DT><B>Returns:</B><DD></DL>\r
+<DT><B>Returns:</B><DD>true is the path is absolute, false otherwise</DL>\r
 </DD>\r
 </DL>\r
 <HR>\r
@@ -287,13 +287,13 @@ public static boolean <B>isAbsolutePath</B>(java.lang.String&nbsp;path)</PRE>
 <A NAME="validateDirectory(java.lang.String)"><!-- --></A><H3>\r
 validateDirectory</H3>\r
 <PRE>\r
-public static void <B>validateDirectory</B>(java.lang.String&nbsp;workDirectory)\r
-                              throws java.lang.IllegalArgumentException</PRE>\r
+public static void <B>validateDirectory</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;workDirectory)\r
+                              throws <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/IllegalArgumentException.html?is-external=true" title="class or interface in java.lang">IllegalArgumentException</A></PRE>\r
 <DL>\r
 <DD><DL>\r
 \r
 <DT><B>Throws:</B>\r
-<DD><CODE>java.lang.IllegalArgumentException</CODE></DL>\r
+<DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/IllegalArgumentException.html?is-external=true" title="class or interface in java.lang">IllegalArgumentException</A></CODE></DL>\r
 </DD>\r
 </DL>\r
 <!-- ========= END OF CLASS DATA ========= -->\r