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[jabaws.git] / website / full_javadoc / compbio / runner / _NativeSpecHelper.html
diff --git a/website/full_javadoc/compbio/runner/_NativeSpecHelper.html b/website/full_javadoc/compbio/runner/_NativeSpecHelper.html
index 05a5ca7..04c478a 100644 (file)
--- a/website/full_javadoc/compbio/runner/_NativeSpecHelper.html
+++ b/website/full_javadoc/compbio/runner/_NativeSpecHelper.html
@@ -2,12 +2,12 @@
 <!--NewPage-->\r
 <HTML>\r
 <HEAD>\r
-<!-- Generated by javadoc (build 1.6.0_14) on Wed Feb 17 16:46:49 GMT 2010 -->\r
+<!-- Generated by javadoc (build 1.6.0_24) on Wed Dec 07 12:30:40 GMT 2011 -->\r
 <TITLE>\r
 _NativeSpecHelper\r
 </TITLE>\r
 \r
-<META NAME="date" CONTENT="2010-02-17">\r
+<META NAME="date" CONTENT="2011-12-07">\r
 \r
 <LINK REL ="stylesheet" TYPE="text/css" HREF="../../stylesheet.css" TITLE="Style">\r
 \r
@@ -92,12 +92,15 @@ compbio.runner</FONT>
 <BR>\r
 Class _NativeSpecHelper</H2>\r
 <PRE>\r
-java.lang.Object\r
+<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">java.lang.Object</A>\r
   <IMG SRC="../../resources/inherit.gif" ALT="extended by "><B>compbio.runner._NativeSpecHelper</B>\r
 </PRE>\r
 <HR>\r
+<B>Deprecated.</B>\r
+<P>\r
 <DL>\r
-<DT><PRE>public class <B>_NativeSpecHelper</B><DT>extends java.lang.Object</DL>\r
+<DT><PRE><FONT SIZE="-1"><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Deprecated.html?is-external=true" title="class or interface in java.lang">@Deprecated</A>\r
+</FONT>public class <B>_NativeSpecHelper</B><DT>extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></DL>\r
 </PRE>\r
 \r
 <P>\r
@@ -117,14 +120,14 @@ java.lang.Object
 <TD><CODE><B><A HREF="../../compbio/runner/_NativeSpecHelper.html#_NativeSpecHelper(int)">_NativeSpecHelper</A></B>(int&nbsp;requiredMemory)</CODE>\r
 \r
 <BR>\r
-&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
+&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<B>Deprecated.</B>&nbsp;&nbsp;</TD>\r
 </TR>\r
 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 <TD><CODE><B><A HREF="../../compbio/runner/_NativeSpecHelper.html#_NativeSpecHelper(int, int)">_NativeSpecHelper</A></B>(int&nbsp;requiredMemory,\r
                   int&nbsp;maxCalculationTime)</CODE>\r
 \r
 <BR>\r
-&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
+&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<B>Deprecated.</B>&nbsp;&nbsp;</TD>\r
 </TR>\r
 </TABLE>\r
 &nbsp;\r
@@ -142,31 +145,31 @@ java.lang.Object
 <TD><CODE><B><A HREF="../../compbio/runner/_NativeSpecHelper.html#getApproprieteQueue()">getApproprieteQueue</A></B>()</CODE>\r
 \r
 <BR>\r
-&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
+&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<B>Deprecated.</B>&nbsp;&nbsp;</TD>\r
 </TR>\r
 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
-<CODE>&nbsp;java.lang.String</CODE></FONT></TD>\r
+<CODE>&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
 <TD><CODE><B><A HREF="../../compbio/runner/_NativeSpecHelper.html#getNativeSpec()">getNativeSpec</A></B>()</CODE>\r
 \r
 <BR>\r
-&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
+&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<B>Deprecated.</B>&nbsp;&nbsp;</TD>\r
 </TR>\r
 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
-<CODE>&nbsp;java.lang.String</CODE></FONT></TD>\r
+<CODE>&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
 <TD><CODE><B><A HREF="../../compbio/runner/_NativeSpecHelper.html#getQueue()">getQueue</A></B>()</CODE>\r
 \r
 <BR>\r
-&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
+&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<B>Deprecated.</B>&nbsp;&nbsp;</TD>\r
 </TR>\r
 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 <CODE>&nbsp;void</CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../compbio/runner/_NativeSpecHelper.html#setQueue(java.lang.String)">setQueue</A></B>(java.lang.String&nbsp;queue)</CODE>\r
+<TD><CODE><B><A HREF="../../compbio/runner/_NativeSpecHelper.html#setQueue(java.lang.String)">setQueue</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;queue)</CODE>\r
 \r
 <BR>\r
-&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
+&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<B>Deprecated.</B>&nbsp;&nbsp;</TD>\r
 </TR>\r
 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
@@ -174,16 +177,16 @@ java.lang.Object
 <TD><CODE><B><A HREF="../../compbio/runner/_NativeSpecHelper.html#setRequiredMemory(int)">setRequiredMemory</A></B>(int&nbsp;memory)</CODE>\r
 \r
 <BR>\r
-&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
+&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<B>Deprecated.</B>&nbsp;&nbsp;</TD>\r
 </TR>\r
 </TABLE>\r
 &nbsp;<A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>\r
 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">\r
-<TH ALIGN="left"><B>Methods inherited from class java.lang.Object</B></TH>\r
+<TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></B></TH>\r
 </TR>\r
 <TR BGCOLOR="white" CLASS="TableRowColor">\r
-<TD><CODE>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</CODE></TD>\r
+<TD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#getClass()" title="class or interface in java.lang">getClass</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notify()" title="class or interface in java.lang">notify</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notifyAll()" title="class or interface in java.lang">notifyAll</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#toString()" title="class or interface in java.lang">toString</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait()" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long)" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long, int)" title="class or interface in java.lang">wait</A></CODE></TD>\r
 </TR>\r
 </TABLE>\r
 &nbsp;\r
@@ -204,7 +207,7 @@ _NativeSpecHelper</H3>
 <PRE>\r
 public <B>_NativeSpecHelper</B>(int&nbsp;requiredMemory)</PRE>\r
 <DL>\r
-</DL>\r
+<DD><B>Deprecated.</B>&nbsp;</DL>\r
 <HR>\r
 \r
 <A NAME="_NativeSpecHelper(int, int)"><!-- --></A><H3>\r
@@ -213,7 +216,7 @@ _NativeSpecHelper</H3>
 public <B>_NativeSpecHelper</B>(int&nbsp;requiredMemory,\r
                          int&nbsp;maxCalculationTime)</PRE>\r
 <DL>\r
-</DL>\r
+<DD><B>Deprecated.</B>&nbsp;</DL>\r
 \r
 <!-- ============ METHOD DETAIL ========== -->\r
 \r
@@ -230,7 +233,7 @@ setRequiredMemory</H3>
 <PRE>\r
 public void <B>setRequiredMemory</B>(int&nbsp;memory)</PRE>\r
 <DL>\r
-<DD><DL>\r
+<DD><B>Deprecated.</B>&nbsp;<DD><DL>\r
 </DL>\r
 </DD>\r
 </DL>\r
@@ -239,9 +242,9 @@ public void <B>setRequiredMemory</B>(int&nbsp;memory)</PRE>
 <A NAME="setQueue(java.lang.String)"><!-- --></A><H3>\r
 setQueue</H3>\r
 <PRE>\r
-public void <B>setQueue</B>(java.lang.String&nbsp;queue)</PRE>\r
+public void <B>setQueue</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;queue)</PRE>\r
 <DL>\r
-<DD><DL>\r
+<DD><B>Deprecated.</B>&nbsp;<DD><DL>\r
 </DL>\r
 </DD>\r
 </DL>\r
@@ -250,9 +253,9 @@ public void <B>setQueue</B>(java.lang.String&nbsp;queue)</PRE>
 <A NAME="getQueue()"><!-- --></A><H3>\r
 getQueue</H3>\r
 <PRE>\r
-public java.lang.String <B>getQueue</B>()</PRE>\r
+public <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>getQueue</B>()</PRE>\r
 <DL>\r
-<DD><DL>\r
+<DD><B>Deprecated.</B>&nbsp;<DD><DL>\r
 </DL>\r
 </DD>\r
 </DL>\r
@@ -261,13 +264,13 @@ public java.lang.String <B>getQueue</B>()</PRE>
 <A NAME="getNativeSpec()"><!-- --></A><H3>\r
 getNativeSpec</H3>\r
 <PRE>\r
-public java.lang.String <B>getNativeSpec</B>()\r
-                               throws java.net.UnknownServiceException</PRE>\r
+public <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>getNativeSpec</B>()\r
+                     throws <A HREF="http://java.sun.com/javase/6/docs/api/java/net/UnknownServiceException.html?is-external=true" title="class or interface in java.net">UnknownServiceException</A></PRE>\r
 <DL>\r
-<DD><DL>\r
+<DD><B>Deprecated.</B>&nbsp;<DD><DL>\r
 \r
 <DT><B>Throws:</B>\r
-<DD><CODE>java.net.UnknownServiceException</CODE></DL>\r
+<DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/net/UnknownServiceException.html?is-external=true" title="class or interface in java.net">UnknownServiceException</A></CODE></DL>\r
 </DD>\r
 </DL>\r
 <HR>\r
@@ -277,7 +280,7 @@ getApproprieteQueue</H3>
 <PRE>\r
 public <A HREF="../../compbio/engine/cluster/dundee/_Queue.html" title="enum in compbio.engine.cluster.dundee">_Queue</A> <B>getApproprieteQueue</B>()</PRE>\r
 <DL>\r
-<DD><DL>\r
+<DD><B>Deprecated.</B>&nbsp;<DD><DL>\r
 </DL>\r
 </DD>\r
 </DL>\r